On Thu, 3 Jul 2008, Ben Bolker wrote:
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> ~ turns out I don't need to look at the C code.
>
> ~ if one uses the mu/size parameterization of the
> negative binomial, R computes size/(size+mu) to
> switch parameterizations. If size>>mu this
> gets rounded to 1 ... should be easy enough
> to test and return NA under these circumstances?
It is all vectorized, so not so easy. But why is NA appropriate, when a
Poisson approximation seems more appropriate?
The same issue affects [pqr]nbinom, of course.
The short-term advice is of course 'don't do that' but use a
suitable
approximation such as Poisson. Maybe there are reasons to support values
of size > 1e10, but I suspect only for completeness and maybe it is better
to at least give a warning.
>
> function (x, size, prob, mu, log = FALSE)
> {
> ~ if (!missing(mu)) {
> ~ if (!missing(prob))
> ~ stop("'prob' and 'mu' both
specified")
> ~ prob <- size/(size + mu)
> ~ }
> ~ .Internal(dnbinom(x, size, prob, log))
> }
>
> ~ Ben Bolker
>
>
> - --------------------------
> ~ Check it out:
>
> curve(dnbinom(1,mu=0.5,size=x),log="x",from=1,to=1e18)
> abline(h=dpois(1,lambda=0.5),col=2,lty=2)
> text(1,dpois(1,lambda=0.5)+0.02,"Poisson",col=2,pos=4)
>
> ~ I will take a look in the C code when I get
> a chance to see if I can offer
> a patch, but in the meantime wanted to alert people to
> this "feature" ... (it looks like I will have to go
> through dnbinom and dbinom_raw to see where the problem
> is ...)
>
> ~ Ben Bolker
>
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--
Brian D. Ripley, ripley at stats.ox.ac.uk
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UK Fax: +44 1865 272595