huangce at gmail.com
2008-Feb-05 09:25 UTC
[Rd] Got *** caught segfault *** with Quantreg on Mac (PR#10699)
Full_Name: Edward Huang
Version: 2.6.1
OS: Mac OS 10.5.1 Leopard
Submission from: (NULL) (71.198.106.232)
I'm trying to run quantile regression on my data. I just couldn't make
it work.
The same dataset ran okay on STATA 10, tho.
Would you please take a look at it?
Here is the error message:
*** caught segfault ***
address 0x3ff00008, cause 'memory not mapped'
Traceback:
1: .Fortran("rqbr", as.integer(n), as.integer(p), as.integer(n +
5),
as.integer(p + 3), as.integer(p + 4), as.double(x), as.double(y),
as.double(tau), as.double(tol), flag = as.integer(1), coef = double(p),
resid = double(n), integer(n), double((n + 5) * (p + 4)), double(n),
as.integer(nsol), as.integer(ndsol), sol = double((p + 3) * nsol), dsol
= double(n * ndsol), lsol = as.integer(0), h = integer(p * nsol), qn
as.double(qn), cutoff = as.double(cutoff), ci = double(4 * p), tnmat
double(4 * p), as.double(big), as.logical(lci1), PACKAGE =
"quantreg")
2: rq.fit.br(x, y, tau = tau, ...)
3: switch(method, fn = rq.fit.fn(x, y, tau = tau, ...), fnb = rq.fit.fnb(x,
y, tau = tau, ...), fnc = rq.fit.fnc(x, y, tau = tau, ...), pfn
rq.fit.pfn(x, y, tau = tau, ...), br = rq.fit.br(x, y, tau = tau, ...),
fcen = rq.fit.fcen(x, y, tau = tau, ...), lasso = rq.fit.lasso(x, y, tau
= tau, ...), scad = rq.fit.scad(x, y, tau = tau, ...), { what
<-
paste("rq.fit.", method, sep = "") if (exists(what,
mode = "function"))
(get(what, mode = "function"))(x, y, ...) else
stop(paste("unimplemented method:", method)) })
4: rq.fit(X, Y, tau = tau, method, ...)
5: rq(PAX ~ PFC + AA + UA + DL + CO + NW + US + Q931 + Q932 + Q933 + Q934 +
Q941 + Q942 + Q943 + Q944 + Q951 + Q952 + Q953 + Q954 + Q961 + Q962 + Q963 +
Q964 + ATLBOS + ATLDEN + ATLDFW + ATLDTW + ATLEWR + ATLIAH + ATLJFK + ATLLAS
+ ATLLAX + ATLLGA + ATLMCO + ATLMIA + ATLMSP + ATLORD + ATLPHX + ATLPIT +
ATLSEA + ATLSFO + ATLSTL + BOSDEN + BOSDFW + BOSDTW + BOSEWR + BOSIAH +
BOSJFK + BOSLAS + BOSLAX + BOSLGA + BOSMCO + BOSMIA + BOSMSP + BOSORD +
BOSPHX + BOSPIT + BOSSEA + BOSSFO + BOSSTL + DENDFW + DENDTW + DENEWR +
DENIAH + DENJFK + DENLAS + DENLAX + DENLGA + DENMCO + DENMIA + DENMSP +
DENORD + DENPHX + DENPIT + DENSEA + DENSFO + DENSTL + DFWDTW + DFWEWR +
DFWIAH + DFWJFK + DFWLAS + DFWLAX + DFWLGA + DFWMCO + DFWMIA + DFWMSP +
DFWORD + DFWPHX + DFWPIT + DFWSEA + DFWSFO + DFWSTL + DTWEWR + DTWIAH +
DTWJFK + DTWLAS + DTWLAX + DTWLGA + DTWMCO + DTWMIA + DTWMSP + DTWORD +
DTWPHX + DTWPIT + DTWSEA + DTWSFO + DTWSTL + EWRIAH + EWRJFK + EWRLAS +
EWRLAX + EWRLGA + EWRMCO + EWRMIA + EWRMSP + EWRORD + EWRPHX + EWRPIT +
EWRSEA + EWRSFO + EWRSTL + IAHJFK + IAHLAS + IAHLAX + IAHLGA + IAHMCO +
IAHMIA + IAHMSP + IAHORD + IAHPHX + IAHPIT + IAHSEA + IAHSFO + IAHSTL +
JFKLAS + JFKLAX + JFKLGA + JFKMCO + JFKMIA + JFKMSP + JFKORD + JFKPHX +
JFKPIT + JFKSEA + JFKSFO + JFKSTL + LASLAX + LASLGA + LASMCO + LASMIA +
LASMSP + LASORD + LASPHX + LASPIT + LASSEA + LASSFO + LASSTL + LAXLGA +
LAXMCO + LAXMIA + LAXMSP + LAXORD + LAXPHX + LAXPIT + LAXSEA + LAXSFO +
LAXSTL + LGAMCO + LGAMIA + LGAMSP + LGAORD + LGAPHX + LGAPIT + LGASEA +
LGASFO + LGASTL + MCOMIA + MCOMSP + MCOORD + MCOPHX + MCOPIT + MCOSEA +
MCOSFO + MCOSTL + MIAMSP + MIAORD + MIAPHX + MIAPIT + MIASEA + MIASFO +
MIASTL + MSPORD + MSPPHX + MSPPIT + MSPSEA + MSPSFO + MSPSTL + ORDPHX +
ORDPIT + ORDSEA + ORDSFO + ORDSTL + PHXPIT + PHXSEA + PHXSFO + PHXSTL +
PITSEA + PITSFO + PITSTL + SEASFO + SEASTL + SFOSTL, tau = 0.5)
Possible actions:
1: abort (with core dump, if enabled)
2: normal R exit
3: exit R without saving workspace
4: exit R saving workspace
Simon Urbanek
2008-Feb-05 19:16 UTC
[Rd] Got *** caught segfault *** with Quantreg on Mac (PR#10699)
Edward, On Feb 5, 2008, at 4:25 AM, huangce at gmail.com wrote:> Full_Name: Edward Huang > Version: 2.6.1 > OS: Mac OS 10.5.1 Leopard > Submission from: (NULL) (71.198.106.232) > > > I'm trying to run quantile regression on my data. I just couldn't > make it work. > The same dataset ran okay on STATA 10, tho. > > Would you please take a look at it? >sure, gladly, if you send us the data (or any other way to reproduce it) ... BTW: this is a crash in a contributed package, so you should ask the maintainer of the package and not file an R bug report. Thanks, Simon> Here is the error message: > > > > *** caught segfault *** > address 0x3ff00008, cause 'memory not mapped' > > Traceback: > 1: .Fortran("rqbr", as.integer(n), as.integer(p), as.integer(n + > 5), > as.integer(p + 3), as.integer(p + 4), as.double(x), as.double(y), > as.double(tau), as.double(tol), flag = as.integer(1), coef = > double(p), > resid = double(n), integer(n), double((n + 5) * (p + 4)), > double(n), > as.integer(nsol), as.integer(ndsol), sol = double((p + 3) * > nsol), dsol > = double(n * ndsol), lsol = as.integer(0), h = integer(p * > nsol), qn > as.double(qn), cutoff = as.double(cutoff), ci = double(4 * p), > tnmat > double(4 * p), as.double(big), as.logical(lci1), PACKAGE = > "quantreg") > 2: rq.fit.br(x, y, tau = tau, ...) > 3: switch(method, fn = rq.fit.fn(x, y, tau = tau, ...), fnb = > rq.fit.fnb(x, > y, tau = tau, ...), fnc = rq.fit.fnc(x, y, tau = tau, ...), pfn > rq.fit.pfn(x, y, tau = tau, ...), br = rq.fit.br(x, y, tau = > tau, ...), > fcen = rq.fit.fcen(x, y, tau = tau, ...), lasso = > rq.fit.lasso(x, y, tau > = tau, ...), scad = rq.fit.scad(x, y, tau = tau, ...), > { what <- > paste("rq.fit.", method, sep = "") if (exists(what, mode = > "function")) > (get(what, mode = "function"))(x, y, ...) else > stop(paste("unimplemented method:", method)) }) > 4: rq.fit(X, Y, tau = tau, method, ...) > > 5: rq(PAX ~ PFC + AA + UA + DL + CO + NW + US + Q931 + Q932 + Q933 > + Q934 + > Q941 + Q942 + Q943 + Q944 + Q951 + Q952 + Q953 + Q954 + Q961 + > Q962 + Q963 + > Q964 + ATLBOS + ATLDEN + ATLDFW + ATLDTW + ATLEWR + ATLIAH + > ATLJFK + ATLLAS > + ATLLAX + ATLLGA + ATLMCO + ATLMIA + ATLMSP + ATLORD + ATLPHX + > ATLPIT + > ATLSEA + ATLSFO + ATLSTL + BOSDEN + BOSDFW + BOSDTW + BOSEWR + > BOSIAH + > BOSJFK + BOSLAS + BOSLAX + BOSLGA + BOSMCO + BOSMIA + BOSMSP + > BOSORD + > BOSPHX + BOSPIT + BOSSEA + BOSSFO + BOSSTL + DENDFW + DENDTW + > DENEWR + > DENIAH + DENJFK + DENLAS + DENLAX + DENLGA + DENMCO + DENMIA + > DENMSP + > DENORD + DENPHX + DENPIT + DENSEA + DENSFO + DENSTL + DFWDTW + > DFWEWR + > DFWIAH + DFWJFK + DFWLAS + DFWLAX + DFWLGA + DFWMCO + DFWMIA + > DFWMSP + > DFWORD + DFWPHX + DFWPIT + DFWSEA + DFWSFO + DFWSTL + DTWEWR + > DTWIAH + > DTWJFK + DTWLAS + DTWLAX + DTWLGA + DTWMCO + DTWMIA + DTWMSP + > DTWORD + > DTWPHX + DTWPIT + DTWSEA + DTWSFO + DTWSTL + EWRIAH + EWRJFK + > EWRLAS + > EWRLAX + EWRLGA + EWRMCO + EWRMIA + EWRMSP + EWRORD + EWRPHX + > EWRPIT + > EWRSEA + EWRSFO + EWRSTL + IAHJFK + IAHLAS + IAHLAX + IAHLGA + > IAHMCO + > IAHMIA + IAHMSP + IAHORD + IAHPHX + IAHPIT + IAHSEA + IAHSFO + > IAHSTL + > JFKLAS + JFKLAX + JFKLGA + JFKMCO + JFKMIA + JFKMSP + JFKORD + > JFKPHX + > JFKPIT + JFKSEA + JFKSFO + JFKSTL + LASLAX + LASLGA + LASMCO + > LASMIA + > LASMSP + LASORD + LASPHX + LASPIT + LASSEA + LASSFO + LASSTL + > LAXLGA + > LAXMCO + LAXMIA + LAXMSP + LAXORD + LAXPHX + LAXPIT + LAXSEA + > LAXSFO + > LAXSTL + LGAMCO + LGAMIA + LGAMSP + LGAORD + LGAPHX + LGAPIT + > LGASEA + > LGASFO + LGASTL + MCOMIA + MCOMSP + MCOORD + MCOPHX + MCOPIT + > MCOSEA + > MCOSFO + MCOSTL + MIAMSP + MIAORD + MIAPHX + MIAPIT + MIASEA + > MIASFO + > MIASTL + MSPORD + MSPPHX + MSPPIT + MSPSEA + MSPSFO + MSPSTL + > ORDPHX + > ORDPIT + ORDSEA + ORDSFO + ORDSTL + PHXPIT + PHXSEA + PHXSFO + > PHXSTL + > PITSEA + PITSFO + PITSTL + SEASFO + SEASTL + SFOSTL, tau = 0.5) > > Possible actions: > 1: abort (with core dump, if enabled) > 2: normal R exit > 3: exit R without saving workspace > 4: exit R saving workspace > > ______________________________________________ > R-devel at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > >