R devel - Nov 2007 - R 2.6.0 make check fails on SGI origin 350 and

Hello

I am trying to install R 2.6.0 on a SGI Origin 350 running IRIX 6.5  
6.5.28f

R was configured with the following options:
> --x-includes=/usr/include/X11
> --x-libraries=/usr/lib/X11
> --includedir=/usr/freeware/include
> --includedir=/usr/freeware/lib32
> --includedir=/usr/freeware/lib64
> --with-readline=no
> --with-iconv=no
> CC=cc

gmake complied successfully, however gmake check failed on d-p-q-r- 
tests.R .
> running code in 'd-p-q-r-tests.R' ... OK
> comparing 'd-p-q-r-tests.Rout' to
'./d-p-q-r-tests.Rout.save' ...
> 959c959
> < [1] "Mean scaled  difference: NaN"
> ---
> > [1] TRUE
> gmake[3]: *** [d-p-q-r-tests.Rout] Error 1
> gmake[3]: Leaving directory `/usr/global/R-build/R-2.6.0/tests'
> gmake[2]: *** [test-Specific] Error 2
> gmake[2]: Leaving directory `/usr/global/R-build/R-2.6.0/tests'
> gmake[1]: *** [test-all-basics] Error 1
> gmake[1]: Leaving directory `/usr/global/R-build/R-2.6.0/tests'
> gmake: *** [check] Error 2

Any ideas would be appreciated.

Cheers,

Kamil

Kamil Marcinkowski                   Westgrid System Administrator
kamil@ualberta.ca                     University of Alberta site
  Tel.780 492-0354                     Research Computing Support
Fax.780 492-1729                     Academic ICT
Edmonton, Alberta, CANADA    University of Alberta


"This communication is intended for the use of the recipient to which  
it is
addressed, and may contain confidential, personal, and/or privileged
information.  Please contact us immediately if you are not the intended
recipient of this communication.  If you are not the intended  
recipient of
this communication, do not copy, distribute, or take action on it. Any
communication received in error, or subsequent reply, should be  
deleted or
destroyed."




	[[alternative HTML version deleted]]

We need to see the d-p-q-r-tests.Rout file, and perhaps ask for some more 
runs (unfortunately that line number is after massaging).  Can you make it 
available to us?  Or at least a portion containing the quoted line (which 
should only occur once)?

On Tue, 6 Nov 2007, kamil Marcinkowski wrote:
> Hello
>
> I am trying to install R 2.6.0 on a SGI Origin 350 running IRIX 6.5
> 6.5.28f
>
> R was configured with the following options:
>
>> --x-includes=/usr/include/X11
>> --x-libraries=/usr/lib/X11
>> --includedir=/usr/freeware/include
>> --includedir=/usr/freeware/lib32
>> --includedir=/usr/freeware/lib64
>> --with-readline=no
>> --with-iconv=no
>> CC=cc
>
>
> gmake complied successfully, however gmake check failed on d-p-q-r-
> tests.R .
>
>> running code in 'd-p-q-r-tests.R' ... OK
>> comparing 'd-p-q-r-tests.Rout' to
'./d-p-q-r-tests.Rout.save' ...
>> 959c959
>> < [1] "Mean scaled  difference: NaN"
>> ---
>>> [1] TRUE
>> gmake[3]: *** [d-p-q-r-tests.Rout] Error 1
>> gmake[3]: Leaving directory `/usr/global/R-build/R-2.6.0/tests'
>> gmake[2]: *** [test-Specific] Error 2
>> gmake[2]: Leaving directory `/usr/global/R-build/R-2.6.0/tests'
>> gmake[1]: *** [test-all-basics] Error 1
>> gmake[1]: Leaving directory `/usr/global/R-build/R-2.6.0/tests'
>> gmake: *** [check] Error 2
>
>
> Any ideas would be appreciated.
>
> Cheers,
>
> Kamil
>
> Kamil Marcinkowski                   Westgrid System Administrator
> kamil at ualberta.ca                     University of Alberta site
>  Tel.780 492-0354                     Research Computing Support
> Fax.780 492-1729                     Academic ICT
> Edmonton, Alberta, CANADA    University of Alberta
>
>
> "This communication is intended for the use of the recipient to which
> it is
> addressed, and may contain confidential, personal, and/or privileged
> information.  Please contact us immediately if you are not the intended
> recipient of this communication.  If you are not the intended
> recipient of
> this communication, do not copy, distribute, or take action on it. Any
> communication received in error, or subsequent reply, should be
> deleted or
> destroyed."
>
>
>
>
> 	[[alternative HTML version deleted]]
>
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
>
-- 
Brian D. Ripley,                  ripley at stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595