izmirlig@mail.nih.gov
2005-Nov-04 00:10 UTC
[Rd] small bug in gl1ce, package lasso2 (PR#8279)
Full_Name: Grant Izmirlian Version: 2.2.0 OS: SuSe Linux version 9.2 Submission from: (NULL) (156.40.34.177) The option exists to include all parameters, including the intercept, in the L-1 constraint, by specifying the argument, sweep.out=NULL, explicitly in the call. However, upon doing this, the function stops with an error report "Matrix build from transformed variables has a constant column" I was able to fix it as follows. In the following line, taken from the same block of code producing the stop error, modify the existing line from X.to.C.stds <- sqrt(apply(X.to.C.w, 2, var)) to X.to.C.stds <- ifelse(con.int, c(1,sqrt(apply(X.to.C.w[,-is.null(sweep.out)], 2, var))), sqrt(apply(X.to.C.w,2,var))) That should work.