Seth Falcon
2005-Mar-02 16:45 UTC
[Rd] Error on Windows installing package to non-default library
Hi all,
I'm seeing an error on Windows when I try to install a package to a
package library path that starts with a digit. I can reproduce the
error as follows using R-devel from Feb 24 on Windows advanced server:
badLib = "c:\\badExample\\2\\foo"
dir.create(badLib, recursive=TRUE)
z = .libPaths()
z = .libPaths(c(badLib, z))
z
[1] "c:\\badExample\\2\\foo"
"C:/falcon/sw/rw2010dev/library"
pkg = "c:\\falcon\\abind_1.1-0.zip"
install.packages(pkg, repos=NULL, lib=badLib)
package 'abind' successfully unpacked and MD5 sums checked
updating HTML package descriptions
Error in gsub("^URL: ../../../library", lib0, readLines(cfile)) :
invalid backreference 2 in regular expression
After looking at src/library/utils/R/windows/linkhtml.R, it seems the
error is that the "\\2" part of the path is interpreted by gsub as a
back reference.
Changing "\\" to "/" in the library path fixes this issue:
> okLib = chartr("\\", "/", badLib)
> z = .libPaths(okLib)
> z
[1] "c:/badExample/2/foo"
"C:/falcon/sw/rw2010dev/library"
> install.packages(pkg, repos=NULL, lib=okLib)
package 'abind' successfully unpacked and MD5 sums checked
updating HTML package descriptions
So adding a call to chartr inside make.search.html would seem to be an
improvement (i.e, it looks good from here, but I haven't tested and
don't know if there are reasons why this would be a bad idea). OTOH,
maybe this should have already happened in the call to .libPaths()?
This came up because on the Windows server I'm using, tempdir()
contains a directory names "2" as part of the path --- and I want to
be
able to install package to temporary package libraries for testing
purposes.
+ seth
Prof Brian Ripley
2005-Mar-02 17:54 UTC
[Rd] Error on Windows installing package to non-default library
You can't please everyone all the time, and in this case you cannot just make the substitution as 1) some parts of Windows demand \ 2) \ is a trail byte in some Japanese characters. Why don't you just ensure that you don't use such paths for .libPaths()? On Wed, 2 Mar 2005, Seth Falcon wrote:> Hi all, > > I'm seeing an error on Windows when I try to install a package to a package > library path that starts with a digit. I can reproduce the error as follows > using R-devel from Feb 24 on Windows advanced server: > > badLib = "c:\\badExample\\2\\foo" > dir.create(badLib, recursive=TRUE) > z = .libPaths() > z = .libPaths(c(badLib, z)) > z > [1] "c:\\badExample\\2\\foo" "C:/falcon/sw/rw2010dev/library" > > pkg = "c:\\falcon\\abind_1.1-0.zip" > install.packages(pkg, repos=NULL, lib=badLib) > package 'abind' successfully unpacked and MD5 sums checked > updating HTML package descriptions > Error in gsub("^URL: ../../../library", lib0, readLines(cfile)) : > invalid backreference 2 in regular expression > > After looking at src/library/utils/R/windows/linkhtml.R, it seems the error > is that the "\\2" part of the path is interpreted by gsub as a back > reference. > > Changing "\\" to "/" in the library path fixes this issue: > >> okLib = chartr("\\", "/", badLib) >> z = .libPaths(okLib) >> z > [1] "c:/badExample/2/foo" "C:/falcon/sw/rw2010dev/library" >> install.packages(pkg, repos=NULL, lib=okLib) > package 'abind' successfully unpacked and MD5 sums checked > updating HTML package descriptions > > So adding a call to chartr inside make.search.html would seem to be an > improvement (i.e, it looks good from here, but I haven't tested and > don't know if there are reasons why this would be a bad idea). OTOH, > maybe this should have already happened in the call to .libPaths()? > > This came up because on the Windows server I'm using, tempdir() contains a > directory names "2" as part of the path --- and I want to be able to install > package to temporary package libraries for testing purposes. > > + seth > > ______________________________________________ > R-devel@stat.math.ethz.ch mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > >-- Brian D. Ripley, ripley@stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595