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Hello everyone,
verison: 1.0.1
platform: Gnu/linux mandrake 7.1beta
I'm running a user function to step through a frame and plot one column
against
the next. This crashes the program fairly reliably although not on the first
try.
Here is a log of the session run through gdb. First I launch R, print out the
top of the frame and the function. (The function I wrote is probably ugly,
especially the for loop, and if you want to suggest how to make it better
I'm
always ready to learn.) Then I run the magic incantation three times and seg
fault. From the shell at that point R crashes and closes the plot window. In
gdb the window stays open and only closes when I quit gdb.
I have appended the .RData file. I also have a core produced in the same way
from the terminal. If you can use it I can send it but it's huge.
Thanks for the great software,
adrian
***************************************************************************
tsetse$ /usr/local/bin/R --debugger=gdb
(gdb) run --vsize 12M --nsize 1200k
> ls()
[1] "my.frame" "my.plot.func"> my.frame[1:2,]
viltid sept97 oct97 nov97beg nov97end dec97beg dec97end jan98 feb98 mar98
1 501 148 53 32 23 17 14 4 3 3
2 502 44 54 45 36 24 9 5 3 2
apr98 may98 jun98 jul98 aug98 sep98 nov98 dec98
1 2 2 1 0 0 0 2 1
2 2 2 1 0 0 0 2 1> my.plot.func
function(the.frame){
#first do the parameter checking:
if (missing(the.frame)){
cat("\n")
cat("Need a data frame argument with 17 monthly catches (sept, oct
...)\n")
cat(" for tsetse use A.FRAME.tsetse.97n98, for adjtse roll your
own.\n")
} #fi
else{
#next cache the initial conditions:
start.par_par(no.readonly = TRUE) #store the inital parameters
on.exit(par(start.par),append=TRUE) #restore the graphics parameters
par(mfrow=c(2,8),mar=c(1,1,1,0),oma=c(0,1,2,1))
#next initialize the function
attach(the.frame)
on.exit(detach(the.frame),append=TRUE)
#function body:
for (i in 1:16){
plot(the.frame[,i],the.frame[,i+1])
abline(lm(the.frame[,i+1]~the.frame[,i]))
}
mtext("Correlation of tsetse samples: sample to sample
plots",side=3,outer=TRUE,cex=1.5)
} #end else
}> my.plot.func(my.frame[,2:18])
> my.plot.func(my.frame[,2:18])
> my.plot.func(my.frame[,2:18])
Program received signal SIGSEGV, Segmentation fault.
0x807c367 in Rf_eval (e=0x1, rho=0x15d9eb8) at eval.c:83
83 eval.c: No such file or directory.
(gdb) backtrace
#0 0x807c367 in Rf_eval (e=0x1, rho=0x15d9eb8) at eval.c:83
#1 0x807d660 in do_begin (call=0x15e135c, op=0x3a59a4, args=0x15e1348,
rho=0x15d9eb8) at eval.c:640
#2 0x807c5f8 in Rf_eval (e=0x15e135c, rho=0x15d9eb8) at eval.c:172
#3 0x806bc30 in Rf_endcontext (cptr=0xbfffee34) at context.c:147
#4 0x807cb40 in Rf_applyClosure (call=0x15d9e54, op=0x7e332c,
arglist=0x15d9e90, rho=0x3adf3c, suppliedenv=0x3a5008) at eval.c:345
#5 0x807c74d in Rf_eval (e=0x15d9e54, rho=0x3adf3c) at eval.c:192
#6 0x8091274 in R_ReplConsole (rho=0x3adf3c, savestack=0, browselevel=0)
at main.c:173
#7 0x8091955 in run_Rmainloop () at main.c:457
#8 0x8091994 in Rf_mainloop () at main.c:471
#9 0x80e6bfc in main (ac=0, av=0xbffff894) at system.c:490
(gdb) quit
The program is running. Exit anyway? (y or n) y
[acuster@tsetse tocrashR]$
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