Puppet users - Jul 2014 - Puppet Master not serving out/reading manifests

I have a really strange issue with my Puppet Master.

I can't seem to get it to serve my manifests properly. I have installed 
manifests in two locations:

   - /etc/puppet/manifests/kungfumaster.mydomain.com.pp
   - /etc/puppet/environments/production/kungfumaster.mydomain.com.pp

Both of which contain something similar to this:

node "kungfumaster.mydomain.com" { 
    notify { "found the one in environments!": }
}

Neither of them run when I connect with my agent. The only one which is 
actually read appears to be /etc/puppet/manifests/site.pp, which does, in 
fact, run:

Notice: /Stage[main]/Main/Node[default]/Notify[thungs]/message: defined
'message' as 'thungs'

This node is defined like this:

node default { 
    notify { 'thungs': }
}

No matter how I've tried, I haven't been able to get these manifests to 
work properly, even when specifying a node default in the aforementioned 
files.

I'm seeing some strange logs emitted from my Puppet Master, but I'm not 
quite clear as to what they mean or how to solve the problem mentioned in 
them:

Jul 31 01:50:28 kungfumaster puppet-master[443]: Could not retrieve fact fqdn
Jul 31 01:50:28 kungfumaster puppet-master[443]: Could not retrieve fact
ipaddress
Jul 31 01:50:28 kungfumaster puppet-master[443]: TrustedInformation expected a
certificate, but none was given.

Configuration files:

   - /etc/puppet/puppet.conf <http://pastebin.com/D8iYR2u9>
   - /usr/share/puppet/rack/puppetmaster/config.ru 
   <http://pastebin.com/HNS7Nskn> (config file for running the Puppet 
   Master rails app)
   - /etc/nginx/nginx.conf <http://pastebin.com/E2Jb39VC>
   - /etc/nginx/sites-enabled/puppetmaster <http://pastebin.com/ZnFy8S1z>

Log files:

   - /var/log/syslog <http://paste.ubuntu.com/7910682/>
   - Output of puppet apply --onetime --no-daemonize --debug --verbose: here 
   <http://paste.ubuntu.com/7910702/>
   - Output of puppet apply --onetime --no-daemonize --debug --verbose 
   --environment production: here <http://paste.ubuntu.com/7910703/>

The Puppet Agent and Puppet Master are both on the exact same host.

The strange message about expecting a certificate is generated here: 
https://j.mp/1zxG08Q

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