Hi Team, We are receiving the below message while updating the package. Please help.> install.packages("parallel", lib="D:/Program Files/R/R-3.2.5/library")Warning: unable to access index for repository https://cran.fhcrc.org/src/contrib: cannot open URL 'https://cran.fhcrc.org/src/contrib/PACKAGES' Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/src/contrib: cannot open URL 'http://www.stats.ox.ac.uk/pub/RWin/src/contrib/PACKAGES' Warning: unable to access index for repository https://cran.fhcrc.org/bin/windows/contrib/3.2: cannot open URL 'https://cran.fhcrc.org/bin/windows/contrib/3.2/PACKAGES' Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/3.2: cannot open URL 'http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/3.2/PACKAGES' Warning messages: 1: package 'parallel' is not available (for R version 3.2.5) 2: package 'parallel' is a base package, and should not be updated>Thanks & Regards, Nithya Dayalan AMS MRL DPS | HCL @ Merck E-mail: nithya.dayalan at merck.com<mailto:nithya.dayalan at merck.com> Tel#+91 44 61053951| Mobile +91 8754232975 Notice: This e-mail message, together with any attachme...{{dropped:14}}
Choose A Different Mirror -- Sent from my phone. Please excuse my brevity. On August 12, 2016 3:53:03 AM PDT, "Dayalan, Nithya" <nithya.dayalan at merck.com> wrote:>Hi Team, > >We are receiving the below message while updating the package. Please >help. > >> install.packages("parallel", lib="D:/Program >Files/R/R-3.2.5/library") >Warning: unable to access index for repository >https://cran.fhcrc.org/src/contrib: > cannot open URL 'https://cran.fhcrc.org/src/contrib/PACKAGES' >Warning: unable to access index for repository >http://www.stats.ox.ac.uk/pub/RWin/src/contrib: >cannot open URL >'http://www.stats.ox.ac.uk/pub/RWin/src/contrib/PACKAGES' >Warning: unable to access index for repository >https://cran.fhcrc.org/bin/windows/contrib/3.2: >cannot open URL >'https://cran.fhcrc.org/bin/windows/contrib/3.2/PACKAGES' >Warning: unable to access index for repository >http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/3.2: >cannot open URL >'http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/3.2/PACKAGES' >Warning messages: >1: package 'parallel' is not available (for R version 3.2.5) >2: package 'parallel' is a base package, and should not be updated >> > > >Thanks & Regards, >Nithya Dayalan >AMS MRL DPS | HCL @ Merck >E-mail: nithya.dayalan at merck.com<mailto:nithya.dayalan at merck.com> >Tel#+91 44 61053951| Mobile +91 8754232975 > >Notice: This e-mail message, together with any >attachme...{{dropped:14}} > >______________________________________________ >R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see >https://stat.ethz.ch/mailman/listinfo/r-help >PLEASE do read the posting guide >http://www.R-project.org/posting-guide.html >and provide commented, minimal, self-contained, reproducible code.
Yes Jeff, I tried it with 10 mirrors. Thanks & Regards, Nithya Dayalan AMS MRL DPS | HCL @ Merck E-mail: nithya.dayalan at merck.com Tel#+91 44 61053951| Mobile +91 8754232975 -----Original Message----- From: Jeff Newmiller [mailto:jdnewmil at dcn.davis.ca.us] Sent: Friday, August 12, 2016 10:43 AM To: Dayalan, Nithya; 'r-help at R-project.org' Cc: Radhakrishan, Balaji Subject: Re: [R] R Package installation Choose A Different Mirror -- Sent from my phone. Please excuse my brevity. On August 12, 2016 3:53:03 AM PDT, "Dayalan, Nithya" <nithya.dayalan at merck.com> wrote:>Hi Team, > >We are receiving the below message while updating the package. Please >help. > >> install.packages("parallel", lib="D:/Program >Files/R/R-3.2.5/library") >Warning: unable to access index for repository >https://cran.fhcrc.org/src/contrib: > cannot open URL 'https://cran.fhcrc.org/src/contrib/PACKAGES' >Warning: unable to access index for repository >http://www.stats.ox.ac.uk/pub/RWin/src/contrib: >cannot open URL >'http://www.stats.ox.ac.uk/pub/RWin/src/contrib/PACKAGES' >Warning: unable to access index for repository >https://cran.fhcrc.org/bin/windows/contrib/3.2: >cannot open URL >'https://cran.fhcrc.org/bin/windows/contrib/3.2/PACKAGES' >Warning: unable to access index for repository >http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/3.2: >cannot open URL >'http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/3.2/PACKAGES' >Warning messages: >1: package 'parallel' is not available (for R version 3.2.5) >2: package 'parallel' is a base package, and should not be updated >> > > >Thanks & Regards, >Nithya Dayalan >AMS MRL DPS | HCL @ Merck >E-mail: nithya.dayalan at merck.com<mailto:nithya.dayalan at merck.com> >Tel#+91 44 61053951| Mobile +91 8754232975 > >Notice: This e-mail message, together with any >attachme...{{dropped:14}} > >______________________________________________ >R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see >https://stat.ethz.ch/mailman/listinfo/r-help >PLEASE do read the posting guide >http://www.R-project.org/posting-guide.html >and provide commented, minimal, self-contained, reproducible code.Notice: This e-mail message, together with any attachments, contains information of Merck & Co., Inc. (2000 Galloping Hill Road, Kenilworth, New Jersey, USA 07033), and/or its affiliates Direct contact information for affiliates is available at http://www.merck.com/contact/contacts.html) that may be confidential, proprietary copyrighted and/or legally privileged. It is intended solely for the use of the individual or entity named on this message. If you are not the intended recipient, and have received this message in error, please notify us immediately by reply e-mail and then delete it from your system.
> On Aug 12, 2016, at 3:53 AM, Dayalan, Nithya <nithya.dayalan at merck.com> wrote: > > Hi Team, > > We are receiving the below message while updating the package. Please help. > >> install.packages("parallel", lib="D:/Program Files/R/R-3.2.5/library") > Warning: unable to access index for repository https://cran.fhcrc.org/src/contrib: > cannot open URL 'https://cran.fhcrc.org/src/contrib/PACKAGES' > Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/src/contrib: > cannot open URL 'http://www.stats.ox.ac.uk/pub/RWin/src/contrib/PACKAGES' > Warning: unable to access index for repository https://cran.fhcrc.org/bin/windows/contrib/3.2: > cannot open URL 'https://cran.fhcrc.org/bin/windows/contrib/3.2/PACKAGES' > Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/3.2: > cannot open URL 'http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/3.2/PACKAGES' > Warning messages: > 1: package 'parallel' is not available (for R version 3.2.5) > 2: package 'parallel' is a base package, and should not be updatedIn most case it is the first warning or error that is most meaningful, but in this case it is the last one. The `installed.packages` function can tell you which packages are in the Bases" category: plic <- installed.packages( .Library, priority = "base")> rownames(plic)[1] "base" "compiler" "datasets" "graphics" "grDevices" "grid" "methods" [8] "parallel" "splines" "stats" "stats4" "tcltk" "tools" "utils" Updating them requires updating your R version, which is what you should do now. -- David.>> > > > Thanks & Regards, > Nithya Dayalan > AMS MRL DPS | HCL @ Merck > E-mail: nithya.dayalan at merck.com<mailto:nithya.dayalan at merck.com> > Tel#+91 44 61053951| Mobile +91 8754232975 > > Notice: This e-mail message, together with any attachme...{{dropped:14}} > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code.David Winsemius Alameda, CA, USA
Hi David, Okay thank you, but the error message receiving for other packages.> install.packages("Rtsne", lib="D:/Program Files/R/R-3.2.5/library")--- Please select a CRAN mirror for use in this session --- Error in download.file(url, destfile = f, quiet = TRUE) : cannot open URL 'https://cran.r-project.org/CRAN_mirrors.csv' In addition: Warning message: In InternetOpenUrl failed: 'A connection with the server could not be established' Warning: unable to access index for repository https://cran.uni-muenster.de/src/contrib: cannot open URL 'https://cran.uni-muenster.de/src/contrib/PACKAGES' Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/src/contrib: cannot open URL 'http://www.stats.ox.ac.uk/pub/RWin/src/contrib/PACKAGES' Warning: unable to access index for repository https://cran.uni-muenster.de/bin/windows/contrib/3.2: cannot open URL 'https://cran.uni-muenster.de/bin/windows/contrib/3.2/PACKAGES' Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/3.2: cannot open URL 'http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/3.2/PACKAGES' Warning message: package 'Rtsne' is not available (for R version 3.2.5) Thanks & Regards, Nithya Dayalan AMS MRL DPS | HCL @ Merck E-mail: nithya.dayalan at merck.com Tel#+91 44 61053951| Mobile +91 8754232975 -----Original Message----- From: David Winsemius [mailto:dwinsemius at comcast.net] Sent: Friday, August 12, 2016 10:51 AM To: Dayalan, Nithya Cc: r-help at R-project.org; Radhakrishan, Balaji Subject: Re: [R] R Package installation> On Aug 12, 2016, at 3:53 AM, Dayalan, Nithya <nithya.dayalan at merck.com> wrote: > > Hi Team, > > We are receiving the below message while updating the package. Please help. > >> install.packages("parallel", lib="D:/Program Files/R/R-3.2.5/library") > Warning: unable to access index for repository https://cran.fhcrc.org/src/contrib: > cannot open URL 'https://cran.fhcrc.org/src/contrib/PACKAGES' > Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/src/contrib: > cannot open URL 'http://www.stats.ox.ac.uk/pub/RWin/src/contrib/PACKAGES' > Warning: unable to access index for repository https://cran.fhcrc.org/bin/windows/contrib/3.2: > cannot open URL 'https://cran.fhcrc.org/bin/windows/contrib/3.2/PACKAGES' > Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/3.2: > cannot open URL 'http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/3.2/PACKAGES' > Warning messages: > 1: package 'parallel' is not available (for R version 3.2.5) > 2: package 'parallel' is a base package, and should not be updatedIn most case it is the first warning or error that is most meaningful, but in this case it is the last one. The `installed.packages` function can tell you which packages are in the Bases" category: plic <- installed.packages( .Library, priority = "base")> rownames(plic)[1] "base" "compiler" "datasets" "graphics" "grDevices" "grid" "methods" [8] "parallel" "splines" "stats" "stats4" "tcltk" "tools" "utils" Updating them requires updating your R version, which is what you should do now. -- David.>> > > > Thanks & Regards, > Nithya Dayalan > AMS MRL DPS | HCL @ Merck > E-mail: nithya.dayalan at merck.com<mailto:nithya.dayalan at merck.com> > Tel#+91 44 61053951| Mobile +91 8754232975 > > Notice: This e-mail message, together with any attachme...{{dropped:14}} > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code.David Winsemius Alameda, CA, USA Notice: This e-mail message, together with any attachme...{{dropped:11}}
On Fri, 12 Aug 2016 06:53:03 -0400 "Dayalan, Nithya" <nithya.dayalan at merck.com> wrote: You don't say what OS you are using, though the packages you were trying to obtain are apparently for Windows. You also don't say whether you are using something like R-Studio, or whether you are on a company network behind a firewall. If you have a sysop, you probably should be going through him or her. There's a very good chance that your system is lacking in permissions. Your network's settings are problem, or Windows or a recent update may be causing your trouble. You should also simply try opening the specific mirror URL sans the package info to see if you can see the page. -- John
This may not have anything to do with the OP's problem, but if permissions are an issue then it should be mentioned. One problem that some windows users encounter is thinking they should "Run As" administrator when installing or running R, rather than letting Windows UAE prompt them for privilege escalation as needed. The side effect of such an action is that (most? all?) files touched by R then become usable only by R running as administrator, and all sorts of weird problems ensue. It is much better to avoid ever running as administrator and updating all packages into the user-specific package library as needed, with the system-wide package library updated only when R is upgraded. -- Sent from my phone. Please excuse my brevity. On August 12, 2016 4:50:22 PM PDT, John Dougherty <jwd at surewest.net> wrote:>On Fri, 12 Aug 2016 06:53:03 -0400 >"Dayalan, Nithya" <nithya.dayalan at merck.com> wrote: > >You don't say what OS you are using, though the packages you were >trying to obtain are apparently for Windows. You also don't say >whether you are using something like R-Studio, or whether you are on a >company network behind a firewall. > >If you have a sysop, you probably should be going through him or her. >There's a very good chance that your system is lacking in permissions. >Your network's settings are problem, or Windows or a recent update may >be causing your trouble. You should also simply try opening the >specific >mirror URL sans the package info to see if you can see the page.
parallel is R's base package and it's already installed with base R. check in below location: /usr/lib64/R/library/ Thanks, Divakar On Fri, Aug 12, 2016 at 3:53 AM, Dayalan, Nithya <nithya.dayalan at merck.com> wrote:> Hi Team, > > We are receiving the below message while updating the package. Please help. > > > install.packages("parallel", lib="D:/Program Files/R/R-3.2.5/library") > Warning: unable to access index for repository https://cran.fhcrc.org/src/ > contrib: > cannot open URL 'https://cran.fhcrc.org/src/contrib/PACKAGES' > Warning: unable to access index for repository > http://www.stats.ox.ac.uk/pub/RWin/src/contrib: > cannot open URL 'http://www.stats.ox.ac.uk/pub/RWin/src/contrib/PACKAGES > ' > Warning: unable to access index for repository https://cran.fhcrc.org/bin/ > windows/contrib/3.2: > cannot open URL 'https://cran.fhcrc.org/bin/windows/contrib/3.2/PACKAGES > ' > Warning: unable to access index for repository > http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/3.2: > cannot open URL 'http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/ > 3.2/PACKAGES' > Warning messages: > 1: package 'parallel' is not available (for R version 3.2.5) > 2: package 'parallel' is a base package, and should not be updated > > > > > Thanks & Regards, > Nithya Dayalan > AMS MRL DPS | HCL @ Merck > E-mail: nithya.dayalan at merck.com<mailto:nithya.dayalan at merck.com> > Tel#+91 44 61053951| Mobile +91 8754232975 > > Notice: This e-mail message, together with any attachme...{{dropped:14}} > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/ > posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >[[alternative HTML version deleted]]