R help - Mar 2016 - read.alignment() crashes

Hi, I am trying to read a fasta file with >15K alignedd sequences. However it
crashes showing a runtime error. I have tried both R.3.2.3 and R.3.2.1 under
windows 7. A smaller fasta file works perfectly fine in either case.

library(seqinr)
myseqs <-
read.alignment("aligned_seqs.fasta",format="fasta")

Thanks,
Eric


	[[alternative HTML version deleted]]

On 01.03.2016 01:34, Eric Hu wrote:
> Hi, I am trying to read a fasta file with >15K alignedd sequences.
However it crashes showing a runtime error. I have tried both R.3.2.3 and
R.3.2.1 under windows 7. A smaller fasta file works perfectly fine in either
case.
>
> library(seqinr)
> myseqs <-
read.alignment("aligned_seqs.fasta",format="fasta")
Just an error message or a crash?
In case of an error message: report it. In case of a crash: Report to 
the seqinr maintainer with a reproducible example.

Best,
Uwe Ligges

>
> Thanks,
> Eric
>
>
> 	[[alternative HTML version deleted]]
>
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>