Luigi Marongiu
2015-Jan-01 18:39 UTC
[R] add scale bar using add.scale.bar() on the main plot drawn with zoom() of the ape package
Dear all, I am drawing a phylogenetic tree using the zoom() function of the ape package. Since I have 476 sequences in my allagnment, this allows me to have the outlook of the main tree and then highlight a portion of it, and this works fine. However I would like to draw a scale bar using add.scale.bar() of ape and this function does indeed draw a bar but in the zoomed portion of the plot. The problem is that I don't know if the scale is relative to the main tree or to the zoomed portion. Does anybody know? for reference the script I used is: add.scale.bar( 0, -0.5, length = 0.1, ask = FALSE, lwd = 1, lcol = "black", cex = 0.5 ) Best regards Luigi