R SIG Debian - Apr 2020 - hash sum mismatch (tested on xenial cran35 repo ) startnig 4/27

Starting 4/27/2020 I started having issues installing r-base/dev packages on
unbuntu 16.04.

Here are the commands I used based on
https://cran.r-project.org/bin/linux/ubuntu/README.html

echo "deb https://cloud.r-project.org/bin/linux/ubuntu xenial-cran35/"
| sudo tee -a /etc/apt/sources.list
gpg --keyserver hkp://keyserver.ubuntu.com:80 --recv-keys
E298A3A825C0D65DFD57CBB651716619E084DAB9
gpg -a --export E298A3A825C0D65DFD57CBB651716619E084DAB9 | sudo apt-key add -
apt-get clean
rm -r /var/lib/apt/lists/*
apt-get update
apt-get install --yes r-base

Here are the logs from the installation attempt:

# apt-get install r-base

Reading package lists... Done
Building dependency tree
Reading state information... Done
The following additional packages will be installed:
  r-base-core r-cran-boot r-cran-class r-cran-cluster r-cran-codetools
r-cran-foreign r-cran-kernsmooth r-cran-lattice
  r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart
r-cran-spatial r-cran-survival r-recommended
Suggested packages:
  elpa-ess r-doc-info | r-doc-pdf r-mathlib
The following packages will be upgraded:
  r-base r-base-core r-cran-boot r-cran-class r-cran-cluster r-cran-codetools
r-cran-foreign r-cran-kernsmooth r-cran-lattice
  r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart
r-cran-spatial r-cran-survival r-recommended
18 upgraded, 0 newly installed, 0 to remove and 19 not upgraded.
Need to get 8,934 kB/45.4 MB of archives.
After this operation, 10.6 MB of additional disk space will be used.
Do you want to continue? [Y/n] y
Get:1 https://cloud.r-project.org/bin/linux/ubuntu xenial-cran35/ r-cran-lattice
0.20-41-1cran1xenial0 [1,177 kB]
Err:1 https://cloud.r-project.org/bin/linux/ubuntu xenial-cran35/ r-cran-lattice
0.20-41-1cran1xenial0
  Hash Sum mismatch
Get:2 https://cloud.r-project.org/bin/linux/ubuntu xenial-cran35/ r-cran-matrix
1.2-18-1xenial0 [3,456 kB]
Err:2 https://cloud.r-project.org/bin/linux/ubuntu xenial-cran35/ r-cran-matrix
1.2-18-1xenial0
  Hash Sum mismatch
Get:3 https://cloud.r-project.org/bin/linux/ubuntu xenial-cran35/ r-cran-spatial
7.3-11-2xenial0 [127 kB]
Err:3 https://cloud.r-project.org/bin/linux/ubuntu xenial-cran35/ r-cran-spatial
7.3-11-2xenial0
  Writing more data than expected (127700 > 126876)
Get:4 https://cloud.r-project.org/bin/linux/ubuntu xenial-cran35/ r-cran-rpart
4.1-15-2xenial0 [697 kB]
Err:4 https://cloud.r-project.org/bin/linux/ubuntu xenial-cran35/ r-cran-rpart
4.1-15-2xenial0
  Hash Sum mismatch
Get:5 https://cloud.r-project.org/bin/linux/ubuntu xenial-cran35/ r-cran-mgcv
1.8-31-1cran1xenial0 [2,771 kB]
Err:5 https://cloud.r-project.org/bin/linux/ubuntu xenial-cran35/ r-cran-mgcv
1.8-31-1cran1xenial0
  Hash Sum mismatch
Get:6 https://cloud.r-project.org/bin/linux/ubuntu xenial-cran35/
r-cran-kernsmooth 2.23-16-1+1xenial0 [91.7 kB]
Err:6 https://cloud.r-project.org/bin/linux/ubuntu xenial-cran35/
r-cran-kernsmooth 2.23-16-1+1xenial0
  Hash Sum mismatch
Get:7 https://cloud.r-project.org/bin/linux/ubuntu xenial-cran35/ r-cran-cluster
2.1.0-2xenial0 [527 kB]
Err:7 https://cloud.r-project.org/bin/linux/ubuntu xenial-cran35/ r-cran-cluster
2.1.0-2xenial0
  Hash Sum mismatch
Get:8 https://cloud.r-project.org/bin/linux/ubuntu xenial-cran35/ r-cran-class
7.3-16-1xenial0 [87.9 kB]
Err:8 https://cloud.r-project.org/bin/linux/ubuntu xenial-cran35/ r-cran-class
7.3-16-1xenial0
  Hash Sum mismatch
Fetched 8,726 kB in 0s (15.9 MB/s)
E: Failed to fetch
https://cloud.r-project.org/bin/linux/ubuntu/xenial-cran35/r-cran-lattice_0.20-41-1cran1xenial0_amd64.deb
Hash Sum mismatch

E: Failed to fetch
https://cloud.r-project.org/bin/linux/ubuntu/xenial-cran35/r-cran-matrix_1.2-18-1xenial0_amd64.deb
Hash Sum mismatch

E: Failed to fetch
https://cloud.r-project.org/bin/linux/ubuntu/xenial-cran35/r-cran-spatial_7.3-11-2xenial0_amd64.deb
Writing more data than expected (127700 > 126876)

E: Failed to fetch
https://cloud.r-project.org/bin/linux/ubuntu/xenial-cran35/r-cran-rpart_4.1-15-2xenial0_amd64.deb
Hash Sum mismatch

E: Failed to fetch
https://cloud.r-project.org/bin/linux/ubuntu/xenial-cran35/r-cran-mgcv_1.8-31-1cran1xenial0_amd64.deb
Hash Sum mismatch

E: Failed to fetch
https://cloud.r-project.org/bin/linux/ubuntu/xenial-cran35/r-cran-kernsmooth_2.23-16-1+1xenial0_amd64.deb
Hash Sum mismatch

E: Failed to fetch
https://cloud.r-project.org/bin/linux/ubuntu/xenial-cran35/r-cran-cluster_2.1.0-2xenial0_amd64.deb
Hash Sum mismatch

E: Failed to fetch
https://cloud.r-project.org/bin/linux/ubuntu/xenial-cran35/r-cran-class_7.3-16-1xenial0_amd64.deb
Hash Sum mismatch

E: Unable to fetch some archives, maybe run apt-get update or try with
--fix-missing

Can someone assist?


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On 4/27/20 6:46 PM, Stanley Lan wrote:
> Starting 4/27/2020 I started having issues installing r-base/dev packages
on unbuntu 16.04.
> 
> Here are the commands I used based on
> https://cran.r-project.org/bin/linux/ubuntu/README.html
> 
> echo "deb https://cloud.r-project.org/bin/linux/ubuntu
xenial-cran35/" | sudo tee -a /etc/apt/sources.list
> gpg --keyserver hkp://keyserver.ubuntu.com:80 --recv-keys
E298A3A825C0D65DFD57CBB651716619E084DAB9
> gpg -a --export E298A3A825C0D65DFD57CBB651716619E084DAB9 | sudo apt-key add
-
> apt-get clean
> rm -r /var/lib/apt/lists/*
> apt-get update
> apt-get install --yes r-base
-- Clipped for clarity
> E: Failed to fetch
https://cloud.r-project.org/bin/linux/ubuntu/xenial-cran35/r-cran-cluster_2.1.0-2xenial0_amd64.deb
Hash Sum mismatch
> 
> E: Failed to fetch
https://cloud.r-project.org/bin/linux/ubuntu/xenial-cran35/r-cran-class_7.3-16-1xenial0_amd64.deb
Hash Sum mismatch
> 
> E: Unable to fetch some archives, maybe run apt-get update or try with
--fix-missing
> 
> Can someone assist?
> 
Stanley,

Totally my fault and should fix itself on the next sync.  I created a 
small error when working on the deployment of R 4.0 binaries to CRAN. 
Didn't catch it in time for sync.  My apologizes.

If you need the packages ASAP, use the PPA where they are synced from: 
https://launchpad.net/~marutter/+archive/ubuntu/rrutter3.5

You can replace the echo and gpg commands with:

sudo add-apt-repository -y ppa:marutter/rrutter3.5

Michael

Great to know it's fixed soon. Thanks.

Stanley
________________________________
From: R-SIG-Debian <r-sig-debian-bounces at r-project.org> on behalf of
Michael Rutter <marutter at gmail.com>
Sent: Monday, April 27, 2020 7:14 PM
To: r-sig-debian at r-project.org <r-sig-debian at r-project.org>
Subject: Re: [R-sig-Debian] hash sum mismatch (tested on xenial cran35 repo )
startnig 4/27



On 4/27/20 6:46 PM, Stanley Lan wrote:
> Starting 4/27/2020 I started having issues installing r-base/dev packages
on unbuntu 16.04.
>
> Here are the commands I used based on
> https://cran.r-project.org/bin/linux/ubuntu/README.html
>
> echo "deb https://cloud.r-project.org/bin/linux/ubuntu
xenial-cran35/" | sudo tee -a /etc/apt/sources.list
> gpg --keyserver hkp://keyserver.ubuntu.com:80 --recv-keys
E298A3A825C0D65DFD57CBB651716619E084DAB9
> gpg -a --export E298A3A825C0D65DFD57CBB651716619E084DAB9 | sudo apt-key add
-
> apt-get clean
> rm -r /var/lib/apt/lists/*
> apt-get update
> apt-get install --yes r-base
-- Clipped for clarity
> E: Failed to fetch
https://cloud.r-project.org/bin/linux/ubuntu/xenial-cran35/r-cran-cluster_2.1.0-2xenial0_amd64.deb
Hash Sum mismatch
>
> E: Failed to fetch
https://cloud.r-project.org/bin/linux/ubuntu/xenial-cran35/r-cran-class_7.3-16-1xenial0_amd64.deb
Hash Sum mismatch
>
> E: Unable to fetch some archives, maybe run apt-get update or try with
--fix-missing
>
> Can someone assist?
>
Stanley,

Totally my fault and should fix itself on the next sync.  I created a
small error when working on the deployment of R 4.0 binaries to CRAN.
Didn't catch it in time for sync.  My apologizes.

If you need the packages ASAP, use the PPA where they are synced from:
https://launchpad.net/~marutter/+archive/ubuntu/rrutter3.5

You can replace the echo and gpg commands with:

sudo add-apt-repository -y ppa:marutter/rrutter3.5

Michael

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R-SIG-Debian at r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-debian

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