Recently in our R 3.1.0 installation the package formatR was upgraded to version
1.0, doing my usual thing, I got the following error, and the destination html
file was not generated.
What can I do if I want to stay at the current formatR version?
Jun
Error: unrecognized fields specified in html_dependency: attachment
In addition: Warning messages:
1: 'function (...)
{
.Deprecated("tidy_source", package = "formatR")
tidy_source(...)
}' is deprecated.
Use 'tidy_source' instead.
See help("Deprecated") and help("formatR-deprecated").
2: In tidy_source(...) :
The option 'keep.blank.line' is deprecated; please use
'formatR.blank'
3: 'function (...)
{
.Deprecated("tidy_source", package = "formatR")
tidy_source(...)
}' is deprecated.
Use 'tidy_source' instead.
See help("Deprecated") and help("formatR-deprecated").
4: In tidy_source(...) :
The option 'keep.blank.line' is deprecated; please use
'formatR.blank'
5: 'function (...)
{
.Deprecated("tidy_source", package = "formatR")
tidy_source(...)
}' is deprecated.
Use 'tidy_source' instead.
See help("Deprecated") and help("formatR-deprecated").
6: In tidy_source(...) :
The option 'keep.blank.line' is deprecated; please use
'formatR.blank'> sessionInfo()
R version 3.1.0 (2014-04-10)
Platform: x86_64-unknown-linux-gnu (64-bit)
[[alternative HTML version deleted]]
Problem solved. User library location had an older rmarkdown, removed that, so
that the current rmarkdown 0.3.3 at the system library location is being used.
-----Original Message-----
From: r-devel-bounces at r-project.org [mailto:r-devel-bounces at r-project.org]
On Behalf Of Zhang,Jun
Sent: Thursday, September 18, 2014 1:08 PM
To: r-devel at r-project.org
Subject: [Rd] formatR 1.0 caused error
Recently in our R 3.1.0 installation the package formatR was upgraded to version
1.0, doing my usual thing, I got the following error, and the destination html
file was not generated.
What can I do if I want to stay at the current formatR version?
Jun
Error: unrecognized fields specified in html_dependency: attachment In addition:
Warning messages:
1: 'function (...)
{
.Deprecated("tidy_source", package = "formatR")
tidy_source(...)
}' is deprecated.
Use 'tidy_source' instead.
See help("Deprecated") and help("formatR-deprecated").
2: In tidy_source(...) :
The option 'keep.blank.line' is deprecated; please use
'formatR.blank'
3: 'function (...)
{
.Deprecated("tidy_source", package = "formatR")
tidy_source(...)
}' is deprecated.
Use 'tidy_source' instead.
See help("Deprecated") and help("formatR-deprecated").
4: In tidy_source(...) :
The option 'keep.blank.line' is deprecated; please use
'formatR.blank'
5: 'function (...)
{
.Deprecated("tidy_source", package = "formatR")
tidy_source(...)
}' is deprecated.
Use 'tidy_source' instead.
See help("Deprecated") and help("formatR-deprecated").
6: In tidy_source(...) :
The option 'keep.blank.line' is deprecated; please use
'formatR.blank'> sessionInfo()
R version 3.1.0 (2014-04-10)
Platform: x86_64-unknown-linux-gnu (64-bit)
[[alternative HTML version deleted]]
______________________________________________
R-devel at r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
Sorry, but this is a wrong list to write to. I'll reply anyway this time...
The formatR package should be irrelevant in this case -- you were
seeing warnings of deprecation. The error came from elsewhere. It is
hard to say what the problem was without a reproducible example.
Anyway, to "fix" the warnings, you can install the development version
of knitr (which I plan to release to CRAN relatively soon):
install.packages('knitr', repos = c('http://rforge.net',
'http://cran.rstudio.com'), type = 'source')
You posted your sessionInfo() but it seems you deleted an important
part: the versions of packages, which makes it even more difficult for
others to tell what the problem could possibly be.
Regards,
Yihui
--
Yihui Xie <xieyihui at gmail.com>
Web: http://yihui.name
On Thu, Sep 18, 2014 at 1:07 PM, Zhang,Jun <JHZhang at mdanderson.org>
wrote:> Recently in our R 3.1.0 installation the package formatR was upgraded to
version 1.0, doing my usual thing, I got the following error, and the
destination html file was not generated.
> What can I do if I want to stay at the current formatR version?
>
> Jun
>
> Error: unrecognized fields specified in html_dependency: attachment
> In addition: Warning messages:
> 1: 'function (...)
> {
> .Deprecated("tidy_source", package = "formatR")
> tidy_source(...)
> }' is deprecated.
> Use 'tidy_source' instead.
> See help("Deprecated") and help("formatR-deprecated").
> 2: In tidy_source(...) :
> The option 'keep.blank.line' is deprecated; please use
'formatR.blank'
> 3: 'function (...)
> {
> .Deprecated("tidy_source", package = "formatR")
> tidy_source(...)
> }' is deprecated.
> Use 'tidy_source' instead.
> See help("Deprecated") and help("formatR-deprecated").
> 4: In tidy_source(...) :
> The option 'keep.blank.line' is deprecated; please use
'formatR.blank'
> 5: 'function (...)
> {
> .Deprecated("tidy_source", package = "formatR")
> tidy_source(...)
> }' is deprecated.
> Use 'tidy_source' instead.
> See help("Deprecated") and help("formatR-deprecated").
> 6: In tidy_source(...) :
> The option 'keep.blank.line' is deprecated; please use
'formatR.blank'
>> sessionInfo()
> R version 3.1.0 (2014-04-10)
> Platform: x86_64-unknown-linux-gnu (64-bit)