Is there any way to capture output (both stdout and stderr) from install.packages? Solutions like sink and capture.output don't work because the install.packages calls out to system2 which is executed in a separate process: test <- capture.output(install.packages("MASS")) The system2 function does have arguments stdout and stderr but afaik these cannot be controlled via install.packages. I'm a bit reluctant to start rolling my own version of install.packages just for this reason. Is there any way to somehow grab this output? Or alternatively, is there a way to make R pipe stdout and stderr from system2 in such a way that they can be captured with sink or capture.output in the R parent process?
Duncan Murdoch
2013-Sep-23 20:20 UTC
[Rd] Capture output of install.packages (pipe system2)
On 13-09-23 2:17 PM, Jeroen Ooms wrote:> Is there any way to capture output (both stdout and stderr) from > install.packages? Solutions like sink and capture.output don't work > because the install.packages calls out to system2 which is executed in > a separate process: > > test <- capture.output(install.packages("MASS")) > > The system2 function does have arguments stdout and stderr but afaik > these cannot be controlled via install.packages. I'm a bit reluctant > to start rolling my own version of install.packages just for this > reason. > > Is there any way to somehow grab this output? Or alternatively, is > there a way to make R pipe stdout and stderr from system2 in such a > way that they can be captured with sink or capture.output in the R > parent process?See the recent thread <https://mailman.stat.ethz.ch/pipermail/r-devel/2013-September/067552.html> for an approach to this. Duncan Murdoch
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