Using R 2.10 on WinXP heatmap(mymap, Rowv=NA, Colv=NA) with mymap values of 0 1 2 3 4 0 NaN 0.000000000 0.00621118 0.0000000 NaN 1 0 0.000000000 0.01041667 0.1250000 NaN 2 0 0.004705882 0.02105263 0.3333333 NaN 3 0 0.004081633 0.02222222 0.5000000 0 4 0 0.000000000 0.01923077 0.1666667 NaN 6 0 0.000000000 0.00000000 0.0000000 NaN 10 0 0.002840909 0.00000000 0.0000000 NaN 20 0 0.002159827 0.00000000 NaN NaN 40 NaN 0.009433962 0.00000000 NaN NaN (the first row and column are labels, not data) produces a plot in which all of the row labelled 6 (all 0's and NaN) is white. This is the same color showing for the NaN values. In contrast, all other 0 values appear as dark red. Have I missed some subtlety, or is this a bug? Ross Boylan