Full_Name: Dan Kelley Version: 1.9.0 OS: OSX (Darwin 7.3.0) Submission from: (NULL) (129.173.23.36) R-1.9.0 will not compile on Apple OSX (Darwin kernel 7.3.0). The error msg starts as follows, and has several more errors. gcc -dynamiclib -L/sw/lib -L/usr/local/lib -install_name /Library/Frameworks/R.f ramework/Versions/1.9.0/Resources/bin/libRlapack.dylib -o libRlapack.dylib dlapa ck0.lo dlapack1.lo dlapack2.lo dlapack3.lo cmplx.lo -lf77blas -latlas -L/sw/lib -L/usr/local/lib -L/sw/lib/gcc/powerpc-apple-darwin7.2.0/3.4 -L/sw/lib/gcc/powe rpc-apple-darwin7.2.0/3.4/../../.. -lfrtbegin -lg2c -lSystem ld: common symbols not allowed with MH_DYLIB output format with the -multi_modul e option /sw/lib/libg2c.a(err.o) definition of common _f__cblank (size 4) /sw/lib/libg2c.a(fmt.o) definition of common _f__cnt (size 40)
I don't think this is a bug in *R*, especially as you appear to be using the unreleased gcc 3.4! Hint: there needs to be a dynamic library for libg2c, not a static one. If there is not, that's a g77 on MacOS X problem, which at one time (gcc 3.1) we had to overcome by using vecLib. See the R-admin manual which says ./configure --with-blas='-framework vecLib' --with-lapack --with-aqua The first two options are strongly recommended. Did you actually follow that advice? You appear to be trying to use atlas, and there is advice about needing a PIC version for that to work. On Mon, 3 May 2004 Dan.Kelley@Dal.Ca wrote:> Full_Name: Dan Kelley > Version: 1.9.0 > OS: OSX (Darwin 7.3.0) > Submission from: (NULL) (129.173.23.36) > > > R-1.9.0 will not compile on Apple OSX (Darwin kernel 7.3.0). The error msg > starts as follows, and has several more errors. > > gcc -dynamiclib -L/sw/lib -L/usr/local/lib -install_name > /Library/Frameworks/R.f > ramework/Versions/1.9.0/Resources/bin/libRlapack.dylib -o libRlapack.dylib > dlapa > ck0.lo dlapack1.lo dlapack2.lo dlapack3.lo cmplx.lo -lf77blas -latlas > -L/sw/lib > -L/usr/local/lib -L/sw/lib/gcc/powerpc-apple-darwin7.2.0/3.4 > -L/sw/lib/gcc/powe > rpc-apple-darwin7.2.0/3.4/../../.. -lfrtbegin -lg2c -lSystem > ld: common symbols not allowed with MH_DYLIB output format with the > -multi_modul > e option > /sw/lib/libg2c.a(err.o) definition of common _f__cblank (size 4) > /sw/lib/libg2c.a(fmt.o) definition of common _f__cnt (size 40)-- Brian D. Ripley, ripley@stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595
What can I say ? Do not use fink. Use -framework vecLib instead of Atlas. See Stefano's page. On May 3, 2004, at 5:29, Dan.Kelley@Dal.Ca wrote:> Full_Name: Dan Kelley > Version: 1.9.0 > OS: OSX (Darwin 7.3.0) > Submission from: (NULL) (129.173.23.36) > > > R-1.9.0 will not compile on Apple OSX (Darwin kernel 7.3.0). The > error msg > starts as follows, and has several more errors. > > gcc -dynamiclib -L/sw/lib -L/usr/local/lib -install_name > /Library/Frameworks/R.f > ramework/Versions/1.9.0/Resources/bin/libRlapack.dylib -o > libRlapack.dylib > dlapa > ck0.lo dlapack1.lo dlapack2.lo dlapack3.lo cmplx.lo -lf77blas -latlas > -L/sw/lib > -L/usr/local/lib -L/sw/lib/gcc/powerpc-apple-darwin7.2.0/3.4 > -L/sw/lib/gcc/powe > rpc-apple-darwin7.2.0/3.4/../../.. -lfrtbegin -lg2c -lSystem > ld: common symbols not allowed with MH_DYLIB output format with the > -multi_modul > e option > /sw/lib/libg2c.a(err.o) definition of common _f__cblank (size 4) > /sw/lib/libg2c.a(fmt.o) definition of common _f__cnt (size 40) > > ______________________________________________ > R-devel@stat.math.ethz.ch mailing list > https://www.stat.math.ethz.ch/mailman/listinfo/r-devel > >==Jan de Leeuw; Professor and Chair, UCLA Department of Statistics; Editor: Journal of Multivariate Analysis, Journal of Statistical Software US mail: 8130 Math Sciences Bldg, Box 951554, Los Angeles, CA 90095-1554 phone (310)-825-9550; fax (310)-206-5658; email: deleeuw@stat.ucla.edu homepage: http://gifi.stat.ucla.edu ------------------------------------------------------------------------ ------------------------- No matter where you go, there you are. --- Buckaroo Banzai http://gifi.stat.ucla.edu/sounds/nomatter.au