similar to: ggplot2 Y axis labels

Hi: I need some help with the legend. I got 14 samples(Muestreo) and I am trying to plot a smooth line for each sample. I am able to accomplish that but the problem is that the legend only displays every other sample. How can I force the legend to show all of my Muestreos? Thanks in advance. fish_ByMuestreo <- structure(list(data = structure(list(SampleDate = structure(c(3L, 3L, 3L, 3L,

I was wondering if anyone could help me with this, simple problem. I am essentially following the example on Hadley's webpage (http://had.co.nz/ggplot2/geom_errorbar.html), but it still doesn't make any sense to me. df <- data.frame(trt = factor(c("intact", "intact", "removed", "removed")), coon = c(0.093, 0.06, 0.057, 0.09), group =

Dear R-list I'm working with with geom_errorbar; specifically I'm trying to reproduce the example Hadley Wickham have on http://had.co.nz/ggplot2/geom_errorbar.html (all in the button of the page) where he makes an nice plot with errorbars and then draw lines between the points. What confuses me is the 'limits' he defines for the errorbars from the se variable. First he creates

Hi all: I've done this before with factors but can't figure how to do it with a continuous variable. I am trying to reorder the sequence of my weeks along the X axis. I want to start with week 27 to 52 and then 1 to 26. I guess I could use levels along with seq() but doesn't seem to work for me. Thanks for your help winter <- structure(list(week = c(27L, 28L, 29L, 30L, 31L, 32L,

Hi R Users, I am using following R code to plot a "grouped boxplot". I'm hoping if I can add MEAN to these boxplots. Data is copied below and attached as text file. install.packages("ggplot2") library(ggplot2) dta<-read.table("Sample.txt",header=T) attach(dta) p <- ggplot(dta, aes(factor(month), nail)) p + geom_boxplot(aes(fill = factor(trt))) Data: month

The graphic design elements in ggplot2 are so well done for color graphics. Thank you! For BW publication graphs, there are a few options I would like to be able to tweak, but can't seem to find the grob handles necessary OR the right plotting strategy. Here's one problem I've been puzzling over: Q> How do you plot points with a grey fill and a black outline around the

Hello HelpeRs, The last print statement in the code segment below results in : Error in data$x[data$x == -Inf] <- range$x.range[1] : replacement has length zero R version 2.14.1 Patched (2011-12-23 r57982) ggplot2: version 0.90 OS : Linux (64bit) Any thoughts? Many Thanks, A. ## code segment starts here df <- data.frame( trt = factor(c(1, 1, 2, 2)), resp = c(1, 5,

Hi all, This could be naivety/stupidity on my part rather than a problem with model output, but here goes.... I have fitted a fairly simple model m1<-glm(count~siteall+yrs+yrs:district,family=quasipoisson,weights=weight,data=m[x[[i]],]) I want to know if yrs (a continuous variable) has a significant unique effect in the model, so I fit a simplified model with the main effect ommitted...

Howdy, Last week I got some great help on why I was getting an error code when trying to run this model, thanks everyone!  I was able to get the code up and running beautifully for several data sets.  Now I am getting different errors with this new data set.  I can't figure out why, I have more data points with this species, and it is ordered exactly the same as the other species I have been

Hello, R users, I have two factors (treat, section) anova design experiment where there are 3 replicates. The objective of the experiment is to test if there is significant difference of yield between top (section 9 to 11) and bottom (section 9 to 11) of the fruit tree under treatment. I found that there are interaction between two factors. I wonder if I can contrast means from levels of

Dear Thomas Lumley, and R-help list members, I have read your article "Network meta-analysis for indirect treatment comparisons" (Statist Med, 2002) with great interest. I found it very helpful that you included the R code to replicate your analysis; however, I have had a problem replicating your example and wondered if you are able to give me a hint. When I use the code from the

Hello, R experts, I have a list called dataHP which has 30 elements (m1, m2, ..., m30). Each element is a 7x6 matrix holding yield data from two factors experimental design, with treatment in column, position in row. For instance, the element 20 is: dataHP[[20]] col1 col2 col3 trt1 trt2 trt3 [1,] 22.0 20.3 29.7 63.3 78.5 76.4 [2,]

I am confused whether Student's sleep data "show the effect of two soporific drugs" or Control against Treatment (one drug). The reason is the next: > require(stats) > data(sleep) > attach(sleep) > extra[group==1] numeric(0) > group [1] Ctl Ctl Ctl Ctl Ctl Ctl Ctl Ctl Ctl Ctl Trt Trt Trt Trt Trt Trt Trt Trt Trt [20] Trt Levels: Ctl Trt > sleep$group [1] 1 1 1 1 1

I am trying to define groupings from levels of factor variables and this the warning message that R give "& not meaningful for factors". The nature of my task is this. I have a variable stage which has the levels (1B, 2A, 2B) - these are the AJCC TNM stages of cancer, and another variable diameter with factor levels ("=< 4", "4 - 6.5, > 6.5; limit values are

Dear, I have a dataset with 4 subjects (see ID in example), and 4 treatment (see TRT in example) which are tested on 2 locations and in 3 blocs. By using Lattice dotplot, I made a graph that shows the raw data per location and per bloc. In that graph, I would like to have a reference line per bloc that refers to the first treatment (T1). However, I can not find how to do that. I can make

Hello, I probably have a syntax error in trying to generate an expected survival curve from a weighted cox model, but I can't see it. I used the help sample code to generate a weighted model, with the addition of a "weights=albumin" argument (I only chose albumin because it had no missing values, not because of any real relevance). Below are my code with the resulting error

I have a dataframe df with columns x, y, and height. I want to create a heatmap-like plot that creates a grid of x by y, and then color codes the grid depending on the value of height. Is there a ggplot2 object to do this? I'm able to easily do this in Excel with pivot tables and conditional formatting so I'm including an image that is close to the output I want. I want to be able to

Hello, I'm having trouble in using "assign(paste ..." command . I could create several dataframes following trinomial distribution using it but it could not be used to check their row means of the created dataframe. For example, the following works: probTrt=matrix(0,4,3); probTrt; #malf, death, normal probTrt[1,]=c(0.064,0.119,0.817);#for Trt 1 probTrt[2,]=c(0.053,0.125,0.823);#for

You need to give the model formula that gave your output. There are two sources of variation (at least), within and between locations; though it looks as though your analysis may have tried to account for this (but if so, the terms are not laid out in a way that makes for ready interpretation. The design is such (two locations) that you do not have much of a check that effects are consistent over

Dear R users, I am trying to use xyplot to draw group mean and CI. The following is the sample code. But I want: 1. Use different colors and symbols to draw individual points, CI and the lines connect group means from different time points; 2. Add jitters to x axis to allow CIs not be overlapped Could anyone modify the attached code to achieve this? Thanks library(lattice)