similar to: Problem with loading RMySQL under sge/qsub

In principle, I'd like to be able to do something like this: sge.parLapply(seq(10), function(x) parLapply(seq(x), function(x) x^2)) In practice, however, I have to resort to acrobatics like this: sge.options(sge.remove.files=FALSE) sge.options(sge.qsub.options='-cwd -V') sge.parLapply(seq(10), function(x) { sge.options(sge.save.global=TRUE)

Hi, I have struggled to re-implement the RMySQL package after upgrading from SuSe 6.3 to 7.2 and from R 1.2.1 to R 1.3.1, to no avail It compiles happily but when loading the package I get the following error > library(RMySQL) Error in dyn.load(x, as.logical(local), as.logical(now)) : unable to load shared library "/home/jniesch/R_HOME/lib/R/library/RMySQL/libs/RMySQL.so":

i was able to install DBI and RMySQL cleanly. I get the error below on "library('RMySQL')". The file it is complaining about is located in /usr/lib/mysql/, where is R trying to load it from? Tried a symlink into /usr/local/lib/mysql to no avail. thx. -P Loading required package: DBI Error in dyn.load(x, as.logical(local), as.logical(now)) : unable to load shared

I'm having trouble getting RMySQL to load. I was able to build it and install it (RMySQL_0.5-11.tar.gz). I was also able to build and install mysql-5.0.37. I've read many postings about this but have not found a mention of my particular problem (some closely related). I get the "unable to load shared library, no such file" error, but all the files do exist, RMySQL.so and

I am having trouble installing RMySQL on a clean install of Fedora Core 4 64 bit on a dual dual core machine (that is, two dual core processors). Seems like the LD_LIBRARY_PATH is incorrect, but I don't seem to have it quite right yet. There are a few mentions of this problem in google, but thus far none of the "fixes" and fixed my problem. I've tried defining the

Hello everybody, i had a big issue with RMySQL, working on an installation of R on multiple nodes via net file-system. The point is that we installed Xampp as suite for mysql, perl, apache and php on every node, and we need to use R scripts with mysql. Xampp doesn't compile anything, it gives you pre-compiled binaries all linked together, you just extract from a tarball. At my first try,

On Wed, 26 Sep 2001, Robert Gentleman wrote: A big THANK YOU to Prof Gentleman, Prof Ripley and T. Hothorn. I can't imagine a better "software support" then the one I experienced with R. Setting LD_LIBRARY_PATH did the magic. It would have never occurred to me since this wasn't necessary for the 1.2.1 version. > go to this directory and type: > ldd RMySQL.so >

Dear all In previous R versions I ran R jobs on our cluster managed by SUN Grid Engine using the Rsge package. With the R-3.0 release, the package Rsge has been discontinued. What would be the equivalent way of running jobs on the cluster using current packages? I understand that the parallel package has been updated. What would be the equivalent to the lines below: require(Rsge)

Hi there, I want to run an R script on a cluster with qsub. Obviously I don't want to display any X window, but I want use png() or something else to write out images. Unfortunately I get the following error message: > png(filename = " ALL.png", width = 480, height = 480, pointsize = 12, bg = "white", res = NA) Error in X11(paste("png::", filename,

Dear R users I have a problem installing RMySQL_0.5-5 in that ld skips incompatible libmysqlclient as shown below. Can someone help? Thanks Einar Arnason I am on a Red Hat Enterprise Linux ES (v. 3 for AMD64/Intel EM64T) 2.4.21-15.EL #1 SMP Thu Apr 22 running mysql Ver 14.7 Distrib 4.1.12, for pc-linux-gnu (i686) using EditLine wrapper distributed under xampp (www.apachefriends.org)

Good Afternoon: Have an R script that uses RMySQL package. Everything works great within 32 bit ubuntu linux environment (/usr/sbin/mysqld: ELF 32-bit LSB shared object, Intel 80386, version 1 (SYSV), dynamically linked (uses shared libs), for GNU/Linux 2.6.15, stripped). > mysqlClientLibraryVersions() 5.1.41 5.1.37 50141 50137 Now testing on 64 bit ubuntu linux environment

Hi, I got error messeges when I try to install RMySQL. The version of MySQL installed on my Debian is 4.0.12. Error messages were about the location of /include and /lib of MySQL distribution. Final error messages were; usr/bin/ld: cannot find -lz Any tips or advices? Thanks -- Sung-youn Kim -------------- Dept. of Political Science Stony Brook University (SUNY at Stony Brook) Office:

Full_Name: Ankhee Dutta Version: 2.3 OS: LINUX Submission from: (NULL) (202.141.12.97) I have a linux system of Mandriva-2007 with R version 2.3.0 and MySQL with 5.0.0. I have also got DBI-R database interface version-0.1-11 installed on my Linux system.While installing RMySQL package version 0.5-11 i am facing problem . while installation the error report which is coming is as follows:

Hello All, I have a technical difficulty installing RMySQL. I am running openSUSE11.1 and R 2.12 I have installed MySQL from the website. and following installation , as root This is the part where trouble begin, ...... checking mysql.h usability... no checking mysql.h presence... no checking for mysql.h... no checking for mysql_init in -lmysqlclient... no checking for mysql_init in

Hi, The problem is most likely, you need to call a R CMD BATCH with your arguments and the R-script inside of a shell script that you submit to your qsub. Unfortunately we don't use qsub anymore so can't test it, but it should be as follows: R-script eg. test.R: > ##First read in the arguments listed at the command line > args=(commandArgs(TRUE)) > > ##args is now a list of

Dear all: Any suggestions are much appreciated. I am looking for a way to make a series of similar, but slightly modified, .r files. My issue is automating making 320 .r files that change the for(i in 1:x) in my base .r file (as well as other elements, e.g., the load(...), setwd(...)). For smaller jobs running on a single computer with batch files, I have been manually changing the for(i in 1:x)

Hi, I am brand new to the world of R, so please bare with me while I goof my way through a question. I am attempting to trial using R with MySQL. The MySQL server is on a Linux box and I am using the Windows (32bit XP) version of R. I have installed RMySQL successfully, however when I load it I get the error: Error : .onLoad failed in loadNamespace() for 'RMySQL', details: call:

Hi, I have a problem loading RMySQL 0.5-5 on Mac OS 10.4.2 running R 2.1.1. I installed RMySQL using: export PKG_CPPFLAGS="-I/usr/local/mysql/include" export PKG_LIBS="-L/usr/local/mysql/lib -lmysqlclient" R CMD INSTALL /Users/gwo/Desktop/RMySQL_0.5-5.tar.gz The installation seemed to work ok, but when I load RMySQL in R I get an error message: >library(RMySQL)

I had installed R and MySQL ,then I input : > install.packages('RMySQL',type='source') show the message below, Why? Why shows "ERROR: configuration failed for package 'RMySQL'"? ??URL?http://mirrors.xmu.edu.cn/CRAN/src/contrib/RMySQL_0.9-3.tar.gz' Content type 'application/x-gzip' length 165363 bytes (161 Kb) ???URL downloaded 161 Kb *

Hi. I'm sorry to revisit a problem that's been much discussed, but I haven't yet been able to overcome it. I am running R 2.5.1 on Windows XP Professional 5.1 (Service Pack 2), and I believe I have MySQL 5.0.45 installed (I downloaded and installed mysql-essential-5.0.45-win32.msi from http://dev.mysql.com/downloads/mysql/5.0.html). Here is what happened when I tried to install