similar to: write dataframes

Hi, I have a data frame Y with the following information, ORF spectra 1 YAL001C 2 2 YAL005C 21 3 YAL007C 2 4 YAL012W 8 5 YAL016W 24 6 YAL019W 3 7 YAL020C 2 8 YAL021C 7 9 YAL022C 3 10 YAL023C 6 11 YAL026C 2 12 YAL029C 1 13 YAL031C 1 14 YAL035W 48 15 YAL038W 173 16 YAL041W 4 17 YAL042W 4 18

Dear all, I am using GNU screen to run multiple R sessions from one working directory in order to split task, however I noticed that dataset is not synchronized e.g. if I have two sessions R1 and R2, and I remove an object from R1, R2 doesn't change as expected or change at random. I have tried to save.image(), q() and then restart both sessions, but it does not help. Any suggestions?

Here is a couple of very simple data.frames: X<-data.frame(A=1:10, B=0, C=1, Ob1=1:10, Ob2=2:11, Ob3=3:12, Ob4=4:13, Ob5=3:12, Ob6=2:11) Y<-data.frame(A=1:20, B=0, C=1, D=5, Ob1=1:10, Ob2=2:11, Ob3=3:12, Ob4=4:13, Ob5=3:12, Ob6=2:11, Ob7=5:9) Z<-data.frame(A=1:30, B=0, C=1, D=6, E=1:2, Ob1=1:10, Ob2=2:11, Ob3=3:12, Ob4=4:13, Ob5=3:12, Ob6=2:11, Ob7=1:10, Ob8=3:12) Each row in the

Hi, I am having problems getting cohen's kappa to work. I have been using the function: ><-ckappa(x,y) from the psy package. I am trying to test for inter-observer reliability, I have 2 observers and 26 categories, however, the two observers might not necessarily have the same range of categories (I have unequal score ranges). However, I thought R could cope with this. Each time I

Hello, I read in the announcement of the UOP that Open Ldap will be deprecated after Version 5 an replaced by the Directory Server. Is the Directory Server included in CentOS 5 or only included in the Version 5 orf the UOP? Cheers Sebastian

Hi All, I wonder if there should be one character for quote= in read.table, i.e., > args(read.table) function (file, header = FALSE, sep = "", quote = "\"'", dec = ".", ... I have a file containing the following lines, 08248-GOTERM 3'-phosphoadenosine 5'-phosphosulfate biosynthetic process 08279-GOTERM 3'-phosphoadenosine

Hi there, I wonder if there is a way of efficiently generating a correlation matrix of two expression matrices. I want to correlate miRNA and mRNA expression and used the following code: ##dat.mi miRNA expression matrix, dat.m mRNA expression matrix nc <- nrow(dat.mi) cor.mat <- data.frame(rep(NA,nrow(dat.m))) pval.mat <- data.frame(rep(NA,nrow(dat.m))) for(i in 1:nc) { cr <- vector()

Dear All, I have two matrices A (40 x 732) and B (40 x 1230) and would like to calculate correlation between them.  I can use: cor(A,B, method="pearson") to calculate correlation between all possible pairs. But the issue is that there is one-many specific mappings between A and B and I just need to calculate correlations for those pairs (not all). Some variables in A (proteins, say p1)

Hello, I have a seemingly simple problem that a tab-delimited file can't be read in. > annoTranscripts <- read.table("matched.txt", sep = '\t', stringsAsFactors = FALSE) Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings, : line 5933 did not have 12 elements However, all lines do have 12 columns. > lines <-

Hello, I'm trying to run a code that uses the snowfall package. Here is the structure of my code. sfInit(parallel=T, cpus = 5, slaveOutfile="ErrorMessage.txt") sfExportAll() sfLibrary(rgdal) sfLibrary(raster) sfLibrary(sp) sfLibrary(rgeos) sfLibrary(snowfall) system.time( sfClusterApplyLB(1:10, function(k) { sfCat(paste("Iteration ", k),

compiler-rt libs must be built with /MT, so the MSVS build is doing the wrong thing here. 2014-10-23 12:52 GMT-07:00 Aaron Ballman <aaron at aaronballman.com>: > On Thu, Oct 23, 2014 at 3:42 PM, Aaron Ballman <aaron at aaronballman.com> wrote: >> On Thu, Oct 23, 2014 at 3:38 PM, Aaron Ballman <aaron at aaronballman.com> wrote: >>> On Thu, Oct 23, 2014 at 2:57

Hello, I have a question regarding relaying. Well, I've set it up and it isn't working. Maybe I am doing something wrong? I added 3 aliases to the icecast.conf file on Host#2. Host#1 has 3 streams that are served up, and that are working. When I connect to one of the aliased screams on host#2, it immediately kicks me off with an error. On Host#2: -> alias list Listing aliases

On Thu, Oct 23, 2014 at 3:38 PM, Aaron Ballman <aaron at aaronballman.com> wrote: > On Thu, Oct 23, 2014 at 2:57 PM, Aaron Ballman <aaron at aaronballman.com> wrote: >> On Thu, Oct 23, 2014 at 2:46 PM, Timur Iskhodzhanov <timurrrr at google.com> wrote: >>> 2014-10-23 11:34 GMT-07:00 Aaron Ballman <aaron at aaronballman.com>: >>>> On Thu, Oct

For any given pre-specified gene or short list of genes, yes the Cox model works fine. Two important caveats: 1. Remeber the rule of thumb for a Cox model of 20 events per variable (not n=20). Many microarray studies will have very marginal sample size. 2. If you are looking at many genes then a completely different strategy is required. There is a large and growing literature; I like Newton

It's been hours since I've seen a post from this list Must be broken again. Regards Greg Cirino ___________________________________ Cirelle Enterprises Inc. 603-425-2221 www.cirelle.com Web Application Development & Design www.cirelle.net ProSpeed High Speed Dial-up - 6 Times Faster www.cedata.com Web, FTP, Email Hosting Services www.mlsbot.com NNEREN MLS IDX Services When You

Hi there I have a list that looks like this object1 object1 78 object1 object2 45 object1 object3 34 object1 object4 45 object2 object2 89 object2 object3 32 object2 object4 13 but i want to create a matrix like this in order to use the dist function of R object1 object2 object3 object4 object1 78 45 34 45 object2 45

Hi all, Suppose I want to set the values in a column to the log of the values of another column like so: object$LogDist <- log10(object$Distance) How do I loop through the objects if I have object1, object2, etc to perform this function? object1$LogDist <- log10(object1$Distance) object2$LogDist <- log10(object2$Distance) object3$LogDist <- log10(object3$Distance) I was trying to

That's good news. For having debug info, you could try adding /Z7 on the cmake cmd-line, such as -DCMAKE_CXX_FLAGS="/Z7". Or use the 'RelWithDebInfo' target instead of 'Release' and add -DCMAKE_CXX_FLAGS="/Ob2" (because that target uses /Ob1 as a default). Can you please send a patch on Phabricator if you fix the LLVM_ENABLE_PDB issue with Clang? The goal

hi, i have problem with transactions and multiple databases. Object1 and Object2 are two different models/databases with different connections, when i use only one model: Object1.transaction do object1.value1 = "123456" object1.save do_some_error end it''s ok, error is produced, nothing is commited and database is unchanged. when i use 2 models, described at

In that case, I can't work out why the first model fails but not the second. I would start looking at "Data" to see what it contains. if: object2 <- polr(Inc ~ Training ,Data,Hess = T,method = "logistic" ) works, the problem may be with the "Adopt" variable. Jim On Tue, Mar 20, 2018 at 10:55 AM, Willy Byamungu <wmulimbi at email.uark.edu> wrote: >