similar to: Cannot re-start R after bus error

Currently, I load the RData file then ls() and str(). But loading the file takes too long if the file is big. Most of the time, I only interested what the variables are in the the file and the attributes of the variables (like if it is a data.frame, matrix, what are the colnames/rownames, etc.) I'm wondering if there is any facility in R to help me avoid loading the whole file.

Hi, I am running a large number of jobs (thousands) in parallel (linux OS 64bit), R version 2.14.1 (2011-12-22), Platform: x86_64-redhat-linux-gnu (64-bit). Up to yesterday everything ran fine with jobs in several blocks (block1, block2 etc) of submission. They are sent to an LSF platform to handle the parallel submission. Today I see that only one of the blocks (the 19) has not finished

I have run into a problem loading a just saved R object using R-devel. I have been saving and loading this particular type of R object for a long while and never ran into this problem. I save, then immediately reload (to test save) and get "ReadItem: unnknown type 65". This error is reproducible after logout from server and restart of emacs and R. Below is my output and

I have run into a problem loading a just saved R object using R-devel. I have been saving and loading this particular type of R object for a long while and never ran into this problem. I save, then immediately reload (to test save) and get "ReadItem: unnknown type 65". This error is reproducible after logout from server and restart of emacs and R. Below is my output and

In the below, I generate a model from an environment that isn't .GlobalEnv with a large object that is unrelated to the model generation. It seems to save the irrelevant object unnecessarily. In my actual use case, I am running and saving many models in a loop that each use a single large data.frame (that gets collapsed into a small data.frame for estimation), so removing it isn't an

Hi, I have a problem with a package I have developed in that functions do not get loaded due to older versions of the functions being in the .GlobalEnv? fetched from .Rdata files stored from previous saved workspaces. I need to be able to fix this somehow when I load the package. I do not want to mess up the search order to fix the problem. How I got myself into this mess is that I started

Hi, Apologies if it has already been posted. I searched the archives and couldn't find the answer to my problem. I am building a R package and while checking it with R CMD check, I get the following error, * checking whether package 'drCCA' can be installed ... ERROR Installation failed. 00install.out shows following message, ** building package indices ... Error in

Another solution is to only save the parts of the model object that interest you. As long as they don't include the formula (which is what drags along the environment it was created in), you will save space. E.g., tfun2 <- function(subset) { junk <- 1:1e6 list(subset=subset, lm(Sepal.Length ~ Sepal.Width, data=iris, subset=subset)$coef) } saveSize(tfun2(1:4)) #[1] 152 Bill

Sorry for the cross-post. Not sure where the problem is... A while back I posted an R function to R-help: cd <- function (dir = tclvalue(tkchooseDirectory()), saveOld = FALSE, loadNew = TRUE) { stopifnot(require(tcltk)) if (saveOld) save.image(compress = TRUE) setwd(dir) rm(list = ls(all = TRUE, envir = .GlobalEnv), envir = .GlobalEnv) if (loadNew &&

Dear all May I know how to solve this problem? I have encountered this problem after I have logged out from Rstudio. Thank you Warning: namespace ?caret? is not available and has been replaced by .GlobalEnv when processing object ?fit.ann? Warning: namespace ?ggplot2? is not available and has been replaced by .GlobalEnv when processing object ?p1? Warning: namespace ?plotly? is not available and

Previously, the R software was perfectly run without error and I am not sure why this happens. I have not installed any new R. If the *RData file is the problem, what should I do? Thank you On Fri, Mar 23, 2018 at 7:58 AM, William Dunlap <wdunlap at tibco.com> wrote: > You haven't given much context, but these error message can come from > load() when loading a *.RData file that

You haven't given much context, but these error message can come from load() when loading a *.RData file that contains objects reference packages not installed in the current installation of R. When R starts it will load a ".RData" file if one exists, this file is typically created when R shuts down and you ask it to save the current session. If you recently upgraded R you the

To follow up on my previous question, suppose a user R session wants to unload one workspace and load another within an R session. Is the following the correct sequence? 1. save.image() to save the current workspace as .Rdata in the current working directory. 2. rm(list=ls()) to remove everything from the workspace. 3. setcwd("xxx") to set the new working directory. 4.

Greetings to all -- I am having a silly problem that I just can't solve. Someone has given me an .RData file will hundreds of data frames. Each data frame has a column named ResultValue, currently character when it should be numeric. I want to loop through all of the data frames to change the variable to numeric, but I cannot figure out how to do it. My best guess was along the lines of:

Hi, I wanted a Q&D way to open a new graphics window but keep the focus in the console window (under Windows and the Rgui), so I wrote a line into my Rprofile.site file as follows: invisible(makeActiveBinding('newdev', function(...) dev.new(restoreConsole=T), .GlobalEnv)) (That is all on one line, incase the mailer re-parses it). This gives me a command "newdev" which

If an attempt is made to attach to position 1, it appears to work (not even a warning) but in fact it doesn't work as many would expect. "search" thinks that it gets placed in position 2, but nothing is actually there (according to "ls"). This is guaranteed to be confusing (and annoying) to people who are used to attaching to position 1 in S-PLUS. I'm not clear on

I want R to read my Microsoft Access database or maybe even a Sybase database. I installed RODBC or at least thought I did. Then I issued the following command: library(RODBC) And got Error in lazyLoadDBfetch(key, datafile, compressed, envhook) : ReadItem: unknown type 241 In addition: Warning message: package 'RODBC' was built under R version 2.3.0 Error: package/namespace

Hi, I am trying to load the library(ks), but I am getting the following error: Loading required package: KernSmooth KernSmooth 2.22 installed Copyright M. P. Wand 1997 Loading required package: mvtnorm Loading required package: rgl Loading required package: misc3d Error in lazyLoadDBfetch(key, datafile, compressed, envhook) : ReadItem: unknown type 241 In addition: Warning messages: 1:

Full_Name: Ross Darnell Version: 2.4.1 OS: Linux Submission from: (NULL) (130.102.133.33) rdarnell at pc:~/Data$ ls -al .RData -rwxrwxrwx 2 root root 13551 2006-12-06 08:58 .RData rdarnell at pc:~/Data$ R R version 2.4.1 (2006-12-18) Copyright (C) 2006 The R Foundation for Statistical Computing ISBN 3-900051-07-0 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to

Dear R team, I had a strange problem that appeared suddenly, and which I'd like to to mention in case it is of interest (although I suspect that I may have unwittingly done something dumb: if so please accept my apology) > library(ctest) ## or any package other than "oz" that I tried Error in as.character(table) : Object ".Dyn.libs" not found > traceback() [1]