similar to: In fact this is a Stats question, but... "The return."

Dear All, I'me having (much) trouble understanding why it happened and answering a referee's comment to part of a submitted manuscript. I've tried to google for help but... I'm really confident that although this is a R-Help list someone can help me! I used R to do an ANCOVA w/ RNA/DNA as the dep var, sl as the indep var and gut (a factor w/ levels: prey and empty) as the

Greetings ~ I need some assistance determining an appropriate approach to analyzing multivariate binary response data, and how to do it in R. The setting: Data from an assay, wherein 6-hours-post-fertilization zebrafish embryos (n=20, say) are exposed in a vial to a chemical (replicated 3 times, say), and 5 days later observed for the presence/absence (1/0) of defects in several organ systems

Full_Name: Thomas Richardson Version: R 2.9.0 GUI 1.28 Tiger build 32-bit (5395) OS: 10.4.11 Submission from: (NULL) (216.254.15.72) I have encountered a problem with points in scatterplots disappearing in a quartz window when it is re-sized (to make it larger). I am constructing an 8x12 matrix of scatterplots each containing approx 600 points. In order to get them in the window I remove the

It might have a noticeable effect on clients. I encountered (probably triggered by this in some way?) that I was unable to het the 'read' bit set in macOS Mail.app. Maybe (as I am doing HA with round robin) the Mail.app client got to one dovecot repository on one tcp connection and then on the other. Is there a reason why syncing tis move from new to cur is a bad idea? Gerben Wierda

On January 6, 2023 3:56:39 AM GMT+02:00, Gerben Wierda <gerben.wierda at rna.nl> wrote: >One step further in my quest to create a replacement mail server. > >I now have my old mail server (2.3.19.1, macOS + MacPorts) and my new (2.3.20, Alpine Linux, Docker, apk package). When I turn on replication it works, but, after a while I see: > >Jan 06 00:50:31 replicator: Panic: data

I can confirm this in a slightly different setting, but still using two-way sync between two dovecots. On e is 2.3.19.1 running on macOS Monterey, the other is 2.3.20 running in an alpine container on Ubuntu. Gerben Wierda (LinkedIn <https://www.linkedin.com/in/gerbenwierda>) R&A IT Strategy <https://ea.rna.nl/> (main site) Book: Chess and the Art of Enterprise?Architecture

Dear all, we have an exciting PhD position applying HPC to the analysis of large scale cancer datasets. The post will suit an applicant from a strong computational background who wishes to apply their knowledge to help develop a better understanding of the processes that control how tumours develop. Details below:- High Performance Computing applied to cancer research: Computational analysis of

Hi, I wonder if anyone can help me with specifying a right model for my analysis. I am a beginner to lme methods and though have spent already many hours studying from various books an on-line helps, I was unfortunately not able to find a solution to my problem on my own. Data structure: I studied escape behavior of three species of a prey to a predator. The prey specimens (many) were in a

Dear All, When I plot the values and linear regression line for one data set, it is fine. But for another one I see zigzags, when I plot the confidence interval >cd Depth CHAOsep12RNA 9,94 804 25,06 1476,833333 40,04 1540,561404 50,11 1575,166667 52,46 349,222222 54,92 1941,5 57,29 1053,507042 60,11 1535,1 70,04 2244,963303 79,97 1954,507042 100,31 2679,140625 >

2014-02-25 10:12 GMT+01:00 Virgo P?rna <virgo.parna at mail.ee>: > On Sun, 23 Feb 2014 19:39:02 +0100, Josu Lazkano <josu.lazkano at gmail.com> wrote: >> >> # dmesg >> ... >> [181041.636190] usb 4-4: new low-speed USB device number 2 using ohci_hcd >> > > I recently read about openwrt (for one of the routers I own). And there was a >

How problematic is it to have default_vsz_limit = 0 in dovecot.conf? macOS+MacPorts had this as a requirement even. Gerben > On 6 Jan 2023, at 16:49, Paul Kudla <paul at scom.ca> wrote: > > > i ran into this as well > > here is the full config for mine with replication > > # cat dovecot.conf > # 2.3.14 (cee3cbc0d): /usr/local/etc/dovecot/dovecot.conf > #

Hi all, new to this forum I'm try to using R to draw a heatmap of my RNA-seq data before doing that I did a log2 transformation of my data and produce a lot -inf in the matrix when I try to use the heatmap function, it seems can not deal with the -inf so I was wondering how to deal with these gene with 0rpkm(they are not 0 in all samples, so I want to keep them in the heatmap) thanks -- View

One step further in my quest to create a replacement mail server. I now have my old mail server (2.3.19.1, macOS + MacPorts) and my new (2.3.20, Alpine Linux, Docker, apk package). When I turn on replication it works, but, after a while I see: Jan 06 00:50:31 replicator: Panic: data stack: Out of memory when allocating 268435496 bytes Jan 06 00:50:32 replicator: Fatal: master:

Dear all, I wrote the following batch script on a iMac, and ran it on a linux mosix cluster. tu <- read.table("cage.mm5.tags.rna_lib.CAA-CAJ.tu-reshape.table") tu_reshaped <- t(reshape(tu[1:50,], direction="wide", timevar="tu", idvar=c("rna","lib"))) write.table(tu_reshaped, "cage.mm5.tags.rna_lib.CAA-CAJ.tu-reshaped.table")

ok a little bit more info .... My servers all run under FreeBSD 12.xx which was also the base for the apple operating system origionally. setting default_vsz_limit = 0 i seem to remember trying with no so great results setting to zero can cause memory over runs (espically with replication) etc i found that when i used the config i sent eariler (vsz_limit is defaulted (not set )) everything

Hi all , I have one query. i have list of some .cel files. in my program i have to mention the path of these .cel files part of my program is, rna.data<-exprs(justRMA(filenames=file.names, celfile.path=*datadir*, sampleNames=sample.names, phenoData=pheno.data, cdfname=cleancdfname(hg18_Affymetrix U133A))) in the place of "datadir" i have to mention the character string of the

I have a very basic question about limma. Assume I have experiments from 3 or more RNA sources in a reference design. It is easy to define individual contrasts but I want to specify a contrast matrix that tests for significant differences among ALL the different RNA sources (i.e. the analogous thing to a simple One-Way ANOVA). How can I do that? Thanks! Max --

I maintain the package affylmGUI. It works when installed on many previous versions of R. I have today tested exactly the same code under R-2.15.3, R-3.0.2, R-3.1.0, R-3.1.1, R-3.1.2 and R-devel. I have also tested the versions of affylmGUI downloaded by biocLite for each version of R and the same result applies. I have no errors under 2.15.3, 3.0.2, 3.1.0 and 3.1.1. The following error

Dear All, Help is needed! I have a matrix with frequencies of fish larvae per length class (var. sl) and age-group (var. median.no) obtained with >k<-table(cut(sl,(5:22)),median.no) >k[2:5,1:5] #to ilustrate k 4 5 6 7 (6,7] 3 1 0 0 (7,8] 3 0 1 0 (8,9] 3 4 3 5 (9,10] 3 15 7 13 from this matrix I would like to obtain the mean age per length class i.e.

I am new to dovecot administration. I?ve read the Wiki but that hasn?t given me the understanding I need. When I query my LDAP (on macOS) on a value for user ?gerben?, I can get that: dumbledore:~ gerben$ dscl /LDAPv3/127.0.0.1 -read /users/gerben GeneratedUID GeneratedUID: 780D870E-6B00-478E-AB70-3D3307215A82 I would like to use that value in dovecot settings, e.g. something like user_attrs =