similar to: RSQLite and undefined symbol:sqlite3_bind_in

Hi All, I tried to install AnnotationDBI like so: source("http://bioconductor.org/biocLite.R") biocLite("AnnotationDbi") and got this error: .... Loading required package: RSQLite Error in dyn.load(file, ...) : unable to load shared library '/RHEL3/local/lib64/R/library/ RSQLite/libs/RSQLite.so': /RHEL3/local/lib64/R/library/RSQLite/libs/RSQLite.so: undefined

Dear R experts, I'm trying to install rgdal in my R 2.11.1 (Ubuntu 10.10). I have as an ouput the following messages. It seems that there are problems with libgdal1.7.0 or sqlite3... Could someboby help me? Thanks a lot! Ale > install.packages() Warning in install.packages() : argument 'lib' is missing: using '/home/ale/R/i686-pc-linux-gnu-library/2. 11' trying URL

Hi, On a fresh install of R on mac os x 10.6.4 (snow leopard) RSQLite did not install while running biocLite() $ R R version 2.11.1 (2010-05-31) Copyright (C) 2010 The R Foundation for Statistical Computing ISBN 3-900051-07-0 [...] Loading required package: utils BioC_mirror = http://www.bioconductor.org Change using chooseBioCmirror(). [Previously saved workspace restored] >

Please let me know where i have to type below thing to RSQLite database get installed.Please let me know the solution.Thanks in advance RSQLite -- Embedding the SQLite engine in R (The RSQLite package includes a recent copy of the SQLite distribution from http://www.sqlite.org.) Installation ------------ There are 3 alternatives for installation: 1. Simple installation: R CMD

Dear all, I am trying to install RSQLite package since I want to install "sqldf", and I used >> install.packages("RSQLite") first, which gave Error message as below: make: *** [RS-DBI.o] Error 1 chmod: cannot access `/usr/lib/R/library/RSQLite/libs/*': No such file or directory ERROR: compilation failed for package 'RSQLite' ** Removing

The GeneSetCollection class in the Bioconductor package GSEABase extends 'list' > library(GSEABase) > showClass("GeneSetCollection") Slots: Name: .Data Class: list Extends: Class "list", from data part Class "vector", by class "list", distance 2 Class "AssayData", by class "list", distance 2 If I create

Hi Folks, I'm new to the linux world and am having some trouble installing the RSQLite package. SQLite is installed, but some dependencies(?) seem to be missing. Can anyone help? > sessionInfo() R version 2.13.0 (2011-04-13) Platform: i686-pc-linux-gnu (32-bit) > install.packages() Installing package(s) into ‘/home/abraham/R/i686-pc-linux-gnu-library/2.13’ (as ‘lib’ is unspecified)

Hi folks, Ubuntu 10.04 64 bit Where can I find 64 bit RSQLite? It seems not there; RSQLite: SQLite interface for R http://cran.r-project.org/web/packages/RSQLite/index.html TIA B.R. Stephen L

hello, if i load the RSQLite package in addition to the RPostgreSQL package, i get various errors when trying to use RPostgreSQL functions. here is an example transcript showing one such error: ========================================================== R version 2.15.0 (2012-03-30) [...] > packageVersion('RPostgreSQL') [1] 0.3.2 > packageVersion('RSQLite') [1] 0.11.1

Hello, I see the following issue in R-devel since 'both' has become the default pkgType for binary platforms. update.packages() fails when you set options(repos). Looks like it is trying to download a tgz file from the src/contrib section of a repository (on a mac). To reproduce this you need to have an older version of AnnotationDbi installed, which I accomplished by faking it,

I'd like to search for a particular string in an SQLite database using RSQLite, but I'm running into problems constructing the query properly, because of embedded quotes and parens in the string. Is there a function that escapes these for me, or some other fixup that would let me do the queries below? In the real situation I don't have control over what strings get searched for.

Seth, I encountered problems installing RSQLite, R-2.7.0, on RHEL4 using Intel 10.1 icc, My sysadmin helped me track down the problem and kindly forwarded me the fix, which corrected the problem. What follows is from the sysadmin. Mark I looked at the error, looks like there is a bug in the source code. I've attached a new tarball, hopefully fixed. I added #include <sys/types.h>

Dear all, I'm trying to import a csv file into sqlite3 and from there into R. Everything looks fine exepct that R outputs the character values in an odd fashion: they are shown as "\"CHARACTER\"" instead of "CHARACTER", but only if I show the character variable as a vector. Does someone know why this happens? Below is a sample code. The first part is written in

What am I doing wrong, or is the \r that I'm getting in the example below a bug? > a <- (1:10) > b <- (LETTERS[1:10]) > df <- as.data.frame(cbind(a, b)) > > df a b 1 1 A 2 2 B 3 3 C 4 4 D 5 5 E 6 6 F 7 7 G 8 8 H 9 9 I 10 10 J > library(RSQLite) > drv <- dbDriver("SQLite") > con <- dbConnect(drv, dbname = "Test")

What am I doing wrong, or is the \r that I'm getting in the example below a bug? > a <- (1:10) > b <- (LETTERS[1:10]) > df <- as.data.frame(cbind(a, b)) > > df a b 1 1 A 2 2 B 3 3 C 4 4 D 5 5 E 6 6 F 7 7 G 8 8 H 9 9 I 10 10 J > library(RSQLite) > drv <- dbDriver("SQLite") > con <- dbConnect(drv, dbname = "Test")

Hi All, I am trying to make write a table in RSQLite. And I get the error mentioned below mat<-as.data.frame(matrix(rnorm(n=244000000),nrow=244000,ncol=1000)) > dbWriteTable(con, "array", mat) [1] FALSE *Warning message: In value[[3]](cond) : RS-DBI driver: (error in statement: too many SQL variables)* Can someone please tell me what is maximum size of a table( max number of

Hello, I am having problems installing RSQLite under FC8. The error message seems to indicate Rversion.h and Rconfig.h are missing. To illustrate the problem, I have copied below the output shown when I first install R (binary distribution) and then try to install RSQLite. Because the problem does not occur when installing RSQLite with R under Windows I suspect the problem is perhaps due to my

All: I am using RSqlite and want to be able to update individual values in a record, such as with this simple example: library(RSQLite) drv<-dbDriver("SQLite") con<-dbConnect(drv,"test.db") my.data<-data.frame(countries=c("US","UK","Canada","Australia","NewZealand"),vals=c(52,36,74,10,98))

Hello, I am trying to import data from an SQLite database to R. Unfortunately, I seem to get wrong data when I try to import very large numbers. For example: I look at the database via SQLiteStudio(v.1.1.3) and I see the following values: OrderID Day TimeToclose 1 2009-11-25 29467907000 2 2009-11-25 29467907000 3 2009-11-25 29467907000 Now I run this R Code: >

Hi, I'm experimenting with using (R)SQLite to do data management. Here are two little problems that I've encountered: 1. The presence of ',' in string values causes trouble since ',' is also the delimiter used in the SQL statement. 2. A newline '\n' line attached to the last string value of each row. Some examples: > library (RSQLite) Loading required