Displaying 20 results from an estimated 10000 matches similar to: "Redhat compilers and lme4 with R-2.4.0"
2006 Oct 03
1
New versions of Matrix and lme4 packages for R-2.4.0
Versions 0.9975-1 of the Matrix and lme4 packages will soon be available on
CRAN for use with R version 2.4.0 or later.
Purpose of the packages:
The Matrix package provides S4 classes and methods for sparse
and dense matrices. The lme4 package provides functions for fitting
and assessing linear or generalized linear mixed effects models (also
called multilevel models). Like the Matrix package,
2006 Oct 03
1
New versions of Matrix and lme4 packages for R-2.4.0
Versions 0.9975-1 of the Matrix and lme4 packages will soon be available on
CRAN for use with R version 2.4.0 or later.
Purpose of the packages:
The Matrix package provides S4 classes and methods for sparse
and dense matrices. The lme4 package provides functions for fitting
and assessing linear or generalized linear mixed effects models (also
called multilevel models). Like the Matrix package,
2005 May 24
1
lme4 package and importIntoEnv errors
I've used packages for some years now and seldom had any trouble using
the tgz files. Now I've come across something I've never seen before.
> version
_
platform i686-pc-linux-gnu
arch i686
os linux-gnu
system i686, linux-gnu
status
major 2
minor 1.0
year 2005
month 04
day 18
language R
> library(lme4)
Loading required package: methods
2006 Oct 14
2
error in lme4 for R 2.4.0 (PR#9297)
Full_Name: Din Chen
Version: 2.4.0
OS: Windows XP
Submission from: (NULL) (66.17.122.18)
I just updated the R.2.4.0. and got the error message for random effect
modelling, which was working on R.2.3.1.
library(lme4)
mmod <- lmer(bright ~ 1+(1|operator), pulp)
summary(mmod)
Then when I tried to extract the residuals and random effect using:
resid(mmodr)
ranef(mmodr)
I got error message:
2006 Oct 30
1
Which executable is associated with R CMD INSTALL?
I'm still having trouble installing the lme4 package on RHEL 3. I've
asked this list and it seems my problem is not universal. Brian
Ripley indicated that the problem was with recognising the Matrix
package, even though I've taken care to get the most recent versions
of Matrix and lme4.
It seems to me that the problem arises because the computer has a site
installation of R-2.3.1
2006 Oct 30
1
Which executable is associated with R CMD INSTALL?
I'm still having trouble installing the lme4 package on RHEL 3. I've
asked this list and it seems my problem is not universal. Brian
Ripley indicated that the problem was with recognising the Matrix
package, even though I've taken care to get the most recent versions
of Matrix and lme4.
It seems to me that the problem arises because the computer has a site
installation of R-2.3.1
2006 Nov 05
1
lme4 install error
Dear all,
I'm trying to install lme4 (after having installed R 2.4.0 from source, and
having installed the latest Matrix package). lme4 fails with the following
message:
pedigree.o definition of _lme4_xSym in section (__DATA,__common)
pedigree.o definition of _lme4_ySym in section (__DATA,__common)
make: *** [lme4.so] Error 1
ERROR: compilation failed for package 'lme4'
** Removing
2006 Nov 16
4
lme4 package: Fitted values and residuals
Dear all,
I have three concerns:
1)
I am running models with the lme4 package. I cannot find a way to pull
out a vector of the fitted values and the residuals. Does anybody know
how to do it?
2)
How can I nest a random effect variable into a "two-level" fixed effect
variable?
3)
Suppose I have the following model:
y = a + b|c + d + error,
where 'a' is a fixed effect, 'c'
2006 Oct 16
3
x86_64, acml-3.5.0-gfortran64 and lme4
I am encountering segfaults when checking the lme4 package on an
Athlon64 system if I use the acml blas. R was built as a 64-bit
application using the GCC 4.0.3 compiler suite including gfortran.
The version of acml is 3.5.0 gfortran64.
I do not encounter the segfaults when I compile R with R's built-in
BLAS. The errors occur in the first example in lme4 in a call to
lmer. It looks like
2012 Aug 29
1
lme4 installation
Being rather inept at all things Linux, I paid a consultant
to fix some things on my computer,? Unforntately, good
help is hard to find.? Here's where I am:
?
...
Loading required package: Matrix
Loading required package: lattice
Error in dyn.load(file, DLLpath = DLLpath, ...) :
? function 'cholmod_l_start' not provided by package 'Matrix'
Error: package/namespace load failed
2010 Jul 14
2
ver 2.11.1 from xterm on Mac without lme4
Hi,
I just installed version 2.11.1 on my Mac OS X 10.5.2. When I try
running R from my xterm, I get the following error:
Error in loadNamespace(name) : there is no package called 'lme4'
Fatal error: unable to restore saved data in .RData
I am returned to the terminal prompt and can not run R. I can open this
version of R from the R console and tried installing the lme4 source
2006 Oct 03
0
[R-pkgs] New versions of Matrix and lme4 packages for R-2.4.0
Thanks, Douglas.
It works.
Only one gripe. Every time I want to
try a new version of your software, I have
to get, compile, patch the latest bleeding edge version of R
as well:
ERROR: This R is version 2.3.1
package 'Matrix' needs R >= 2.4.0
Douglas Bates wrote:
> Versions 0.9975-1 of the Matrix and lme4 packages will soon be available on
> CRAN for use with R
2006 Aug 02
2
lme4 and lmeSplines
I'm trying to use the lmeSplines package together with lme4.
Below is (1) an example of lmeSplines together with nlme (2) an
attempt to use lmeSplines with lme4 (3) then a comparison of the
random effects from the two different methods.
(1)
require(lmeSplines)
data(smSplineEx1)
dat <- smSplineEx1
dat.lo <- loess(y~time, data=dat)
plot(dat.lo)
dat$all <- rep(1,nrow(dat))
times20
2009 Sep 18
1
Unable to install lme4
I am unable to install package lme4, after several attempts to do so using various repository URLs.
Just to make sure everything works fine with proxy, connection, etc, I installed ggplot2 and it worked fine.
I am using command
install.packages("lme4", lib="/myRlibs"),
optionally using contrib argument with different URLs.
Error message the I get is
Warning message;
In
2005 Aug 12
1
Problem with lme4
Hi,
I cannot seem to get lme4 to work. I have installed the lme4 and Matrix
package with apt-get. and both can be found in /usr/lib/R/site-library.
When I tried an example for lmer, R could not find the function lmer(),
> library(lme4)
Attaching package: 'lme4'
The following object(s) are masked from package:nlme :
getCovariateFormula getResponseFormula
2006 Jan 12
1
"infinite recursion" in do.call when lme4 loaded only
A larg program which worked with lme4/R about a year ago failed when I
re-run it today. I reproduced the problem with the program below.
-- When lme4 is not loaded, the program runs ok and fast enough
-- When lme4 is loaded (but never used), the do.call fails
with infinite recursion after 60 seconds. Memory used increases
beyond bonds in task manager.
-- I tested a few S3 based packages
2006 Jan 12
1
"infinite recursion" in do.call when lme4 loaded only
A larg program which worked with lme4/R about a year ago failed when I
re-run it today. I reproduced the problem with the program below.
-- When lme4 is not loaded, the program runs ok and fast enough
-- When lme4 is loaded (but never used), the do.call fails
with infinite recursion after 60 seconds. Memory used increases
beyond bonds in task manager.
-- I tested a few S3 based packages
2010 Feb 28
1
ubuntu hardy heron and lme4
I have R version 2.10.1 (2009-12-14) installed on Ubuntu HH (version 8.04)
I installed lme4 from the Ubuntu respository. When I executed the library(lme4)
command, R responds that lme4.so was not found.
I then uninstalled lme4 and tried again from cran. When the program tried to
compile, there was a message that -llapack could not be found, so the package
failed to install.
If I execute the
2005 Jan 28
3
Conflicts using Rcmdr, nlme and lme4
Hello all!
R2.0.1, W2k. All packages updated.
I?m heavily dependant on using mixed models. Up til?now I have used
lme() from nlme as I have been told to. Together with estimable() from
gmodels it works smooth. I also often run Rcmdr, mostly for quick
graphics.
After using Rcmdr, on reopening the R workspace all help libraries for
Rcmdr (22 !) loads, among them nlme, but not Rcmdr itself. Why?
2008 Mar 03
1
Problem with lme4 use and installation
Dear all,
I've been trying to install the lme4 package from
http://r-forge.r-project.org/projects/lme4/. However, when wanting to load
the package, I get an message saying that "x-tabs" are masked (see pasted
code). Can anyone point to what has gone wrong?
Kind regards,
Andreas Nord
Sweden
> utils:::menuInstallLocal()
package 'lme4' successfully unpacked and MD5 sums