similar to: how do I tell configure where to find Java?

Before I do that, I would need to remove the gcj stuff that are in /usr/bin. If I know how to remove gcj, I'd gladly do that. However, for the particular version of the OS, the entire GCC seems to be bundled into one rpm, and I could not remove just the gcj component. Neither do I wish to mess with files that are part of some RPMs--- in my experience that's invitation for trouble later.

Dear R-help, Has anyone tried running R on a Beowulf-type cluster? I can get R to run in batch (using R CMD BATCH) on a cluster, but am wondering if it is possible to get an interactive R session on a compute node. Right now, if I run: beorun --nolocal R I just get the R start-up message and back to the shell prompt. If I try bpsh 0 R I can get R started (but the R prompt does not

Dear DevelopeRs, I'd like to ask those who develop R packages with compiled code to please try avoiding dependency on GCC (gcc/g77/gfortran/g++) specific features in the code, for the simple reason that there are non-GCC compilers out there that might choke on such features. I found this out back when I was trying to build R-2.3.0-to-be on our dual Opteron based Scyld cluster. Because the

Dear R-devel, [I'm not sure if this is appropriate for R-devel. If not, I'm more than happy to move it to R-help.] As those of you who saw my post on R-help know, I've been trying to build R-patched on a dual Opteron box running Scyld Beowulf, using the PGI 6.1 compilers. The build went fine, but I couldn't get it to pass make check-all. Jennifer Lai, who reported success with

Dear list members, I am starting to get acquainted with linux on a ubuntu 11.10 installation on an external hard disk. I have just installed R and all the packages available in the r-cran-* list. Now, I would like to get on with the installation of packages like Deducer and Acinonyx. The former requires JGR which in turn requires Java. I have tried to follow the instructions available at the

Dear all, I installed the amd64 cran2deb [1] JGR binaries on a fresh Debian testing, and JGR is missbehaving. When JGR starts up, one core of the CPU goes to 100% and stays there, even though I am keeping it idle and not performing any operation. I tried JGR with both sun-java6-jdk and openjdk-6-jdk, debian-liv:/home/liviu# update-alternatives --config java There are 4 choices for the alternative

# rpm -qa | grep -E '^(java|jdk|jre)-' jre-1.6.0_03-fcs java-1.4.2-gcj-compat-1.4.2.0-27jpp jdk-1.6.0_03-fcs java is a CentOS package. jdk and jre are from Sun. (I need Java >= 1.5.0 for an application I'm installing.) # update-alternatives --config java There are 1 programs which provide 'java'. Selection Command ----------------------------------------------- *+

Morning All: Having problems installing this one into my R setup and wondered if anyone on the list had the same problem and found a workable solution. First to the system particulars: OS is the Hardy Heron edition of Ubuntu Linux R version is 2.13.1 Java installation is sun-java6 Next up is the result of javareconf: R CMD javareconf Java interpreter : /usr/bin/java Java version : 1.5.0

Hi All, While attempting to build R-patched using the Portland Group compiler suite on our dual Opteron 250 box running Scyld 29cz5 (based on RH, kernel 2.4.29), I get: make[5]: Leaving directory `/home/andy/Rbuild/R221-pgi/src/library/tools/src' make[5]: Entering directory `/home/andy/Rbuild/R221-pgi/src/library/tools/src' pgcc -I../../../../include -I/include -I/include/CC -fpic

Having difficulties getting rJava to install on my Debian Squeeze box. Perused the R-help list and tried some things that have worked for others but not for me. Below is the output of my attempted build, R CMD javareconf -e, and sessionInfo(). Note I tried the R CMD javareconf also as root, restarted R after each of these, all no help. * Installing *source* package ?rJava? ... checking for

As ever, I learn from this: I didn't know apt-file. Got it, installed it, used it: root at DebianAdvent:/home/chris/Downloads/gmp-6.1.2# apt-file search jni.h android-libnativehelper-dev: /usr/include/android/nativehelper/jni.h android-platform-frameworks-native-headers: /usr/include/android/android/asset_manager_jni.h android-platform-frameworks-native-headers:

So whats good practice for installing Java/JDK and Tomcat for EL6 these days? The base repository included Tomcat6.6 is built with GCJ which I'd rather avoid. I'm fine with using OpenJDK ... Do most folks just use the Apache tarball for Tomcat and install it in a user directory or /opt/something ? -- john r pierce N 37, W 122 santa cruz ca

strugging with things here... tried tracking the info on the Wiki (which apparently is now in need of a maintainer)... http://wiki.centos.org/HowTos/JavaOnCentOS My primary interest is using Xalan/Saxon/xslt/xsl-fo docbook generation. I was thinking that all I really need is jre but downloaded both jre and jdk just in case. can anyone tell me what I'm doing wrong? (after removing both jdk

Hi People I have been following the instructions here http://wiki.centos.org/HowTos/JavaOnCentOS but trying to modify them for jdk-6u7-linux-amd64.rpm but there doesn't see to be a compatible java-1.6.0-sun-compat-*.rpm. Does one exist ? If not can anyone point me to some documentation on how I can manually set up things so alternatives will work allowing multiple Java versions.

Morning All: Having problems installing this one into my R setup and wondered if anyone on the list had the same problem and found a workable solution. First to the system particulars: OS is the Hardy Heron edition of Ubuntu Linux R version is 2.13.1 Java installation is sun-java6 Next up is the result of javareconf: R CMD javareconf Java interpreter : /usr/bin/java Java version : 1.5.0

Hi all, I am new to Xapian and want to use it with Java. In order to do that I tried to compile the Java bindings. I set XAPIAN_CONFIG and invoked "configure". However "./configure --with-java" exits with an error. Point of failure: checking for jni.h... no checking for jni.h in /usr/lib/jvm/java-1.5.0-sun/include... no checking for jni.h in

For scalix on Centos the Scalix forum provides instructions for convincing Scalix that Centos is Redhat: http://www.scalix.com/community/viewtopic.php?t=516&highlight=centos I am up to the point of getting Java JDK1.4.2 installed. I did a: yum list|grep "java" and got: gcc-java.i386 3.4.4-2 installed java-1.4.2-gcj-compat.noarch

Dear R-help, This one is probably a piece of cake for regexp masters. I'd like to split a character vector (for simplicity, say of length one for now) that contains fields that are delimited by arbitrary number of white spaces (e.g., " a b c "). How do I get the character vector that contain the fields? In the example I gave, I've tried: > strsplit(" a b c

I am working on installing Freemind (http://freemind.sourceforge.net/wiki/index.php/Main_Page) on my new notebook. And it is not working... I downloaded all the rpms and put them into my local repo, enabled the jpackages repos then, well here is what is happening: yum install freemind* jcalendar* jgoodies-forms* Loading "installonlyn" plugin Loading "priorities" plugin

I have installed both: jdk-6u5-linux-i586-rpm.bin jre-6u5-linux-i586-rpm.bin But no Java plugin in Firefox. I go to: http://java.com/en/download/help/enable_browser.xml And yes, Java is enabled but still get the dreaded 'download plugin'. I seem to recall some magic linking needed, but my docs are in Freemind that I can't get installed either.....