similar to: graphlets

I've been experimenting some with the graphlets which S-Plus 6.1 has. Is there something similar in R? I've looked through documentations, and at SJava, but haven't found it. (If you don't know what a graphlet is, here's what it appears to be: a graphlet is a binary file that encodes information about a graph. Java uses spgraph.jar to display the graph and allow certain

I have already recieved two very helpful replies. Let me describe the problem we are trying to solve more clearly -- one of the suggestions was along a line I'd never thought of, and I'd like to encourage more! R is being used in a microarray/QC situation, in essentially a batch mode. The applications that are "running the show" in terms of interacting with the user's

I am trying to clear up all the "NOTE"s before a CRAN submission, but am a bit confused about this one.?? What is it complaining about -- that it doesn't like my name? ... * checking for file ?deming/DESCRIPTION? ... OK * this is package ?deming? version ?1.4-1? * checking CRAN incoming feasibility ... [7s/18s] NOTE Maintainer: ?Terry Therneau <therneau.terry at mayo.edu>?

I've created some Splus code for a microarray problem that - needed to be in C, to take advantage of some sparse matrix properties - uses a cholesky decompostion as part of the computation For the cholesky, I used the cholesky2 routine, which is a part of the survival library. It does just what I want and I'm familiar with it (after all, I wrote it). In Splus, this all works

------------- Begin Forwarded Message ------------- Date: Wed, 5 Jul 2006 09:09:14 -0500 (CDT) From: Terry Therneau <therneau at mayo.edu> Subject: RE: Problem with coxme To: jhz22 at medschl.cam.ac.uk Cc: R-help at stat.mat.ethz.ch, liulei at virginia.edu, spencer.graves at pdf.com Content-MD5: BXKVsHtW/1I9mIUqrXBU0g== The original question involved a strange error message from coxme

Dear Any, I am trying to initialise Rjava with the objective of running ORCA within R. I am running R1.5.1 on Windows2000 and get the same problem with Sun Java run time jre-1.2.2_013 Java j2re-1.4.1_01 Microsoft Java Virtual Machine Build 3805 .JavaInit() is failing at : .C("s_start_VM", as.character(classPath), as.character(classPath),

-------- Original Message -------- Subject: Re: How to obtain nonparametric baseline hazard estimates in the gamma frailty model? Date: Mon, 04 Nov 2013 17:27:04 -0600 From: Terry Therneau <therneau.terry at mayo.edu> To: Y <yuhanusa at gmail.com> The cumulative hazard is just -log(sfit$surv). The hazard is essentially a density estimate, and that is much harder. You'll notice

In one of my plot functions it is convenient to use clipping to restrict the range of some output. But at the end of the function I'd like to turn it off, i.e., so that a subsequent use of legend(), text() or whatever is not affected. I don't quite see how to do this -- it seems that the only way to turn off clip is with a new plot. -- Terry M Therneau, PhD Department of Health

When I run R CMD check on the survival package I invariably get a note: ... * checking for file ?survival/DESCRIPTION? ... OK * this is package ?survival? version ?3.2-6? * checking CRAN incoming feasibility ... NOTE Maintainer: ?Terry M Therneau <therneau.terry at mayo.edu>? ... This is sufficient for the auto-check process to return the following failure message: Dear maintainer,

For all those few of you who care about weird statistical visualization software, I've finally made available a "test" release for R-Orca. There are examples of a 2-d variable selection plot (i.e. 2-d straight projection, with selection of the 2 variables to view), a GrandTour plot, and a Simplicial data plot. The points of interest are the ability to brush and select from the

Is there a way to include the compiled version of a vignette in the doc directory but mark it to NOT be rerun by CRAN??? I think I remember that this is possible, but have forgotton how.?? (It might even be a false memory.) Terry T. Background:? Beth Atkinson and I are splitting out many of the vignettes from the survival package into a separate package survivalVignettes.? There are a few

dear R-helper, I tried to find out a package in which i can have penalized maximum likelihood estimator applying on generalized extreme value distribution with beta function) but could not. would you please help me to know the name of the package. thanks for your help. S.Murshed --- r-help-request at stat.math.ethz.ch wrote: > Send R-help mailing list submissions to > r-help at

You can legally cast a function pointer to another function pointer, where the signatures differ. (It is not legal to cast between data and function pointers.) I would make typedefs for the various signatures, as the casting syntax is more readable then. Bill Dunlap TIBCO Software wdunlap tibco.com On Fri, Dec 29, 2017 at 10:13 AM, Therneau, Terry M., Ph.D. < therneau at mayo.edu> wrote:

Yes, that is exactly the problem.? The code found in the "config" script is never run.? But why doesn't it get run? On 9/6/19 5:44 AM, Georgi Boshnakov wrote: > I cloned therneau/survival and the installation failed since there is no definition for exported function survfit(). > A file seems to be missing - there is survfit0() and survfit0.R but, compared to CRAN, no

Thanks to Duncan's recent work on SJava, I've got a (so far) stable platform to put together the R-Orca interface (dynamic graphics, including brushing, subseting, etc). While the first version will be looking at installation issues and study basic user interfaces for providing a few working examples, it will be important for this particular package to look at how one integrates a

I cloned therneau/survival and the installation failed since there is no definition for exported function survfit(). A file seems to be missing - there is survfit0() and survfit0.R but, compared to CRAN, no survfit.R. Georgi Boshnakov ---------------------------------------------------------------------- Message: 1 Date: Thu, 05 Sep 2019 12:53:11 -0500 From: "Therneau, Terry M.,

I haven't done any R memory debugging lately, but https://www.mail-archive.com/rcpp-devel at lists.r-forge.r-project.org/msg10289.html shows how I used to have gdb break where valgrind finds a problem so you could examine the details. Also, running your code after running gctorture(TRUE) can help track down memory problems. -Bill On Wed, Feb 7, 2024 at 12:03?PM Therneau, Terry M., Ph.D.

I found an issue with the data() command this evening when working on the survival package. 1. I have a lot of data sets in the package, almost all used in at least one vignette, help file, or test.? As a space saving measure, I have bundled many of them together, i.e., the file data/cancer.rda contains 19 data sets, many of them small. The resulting file (using xz compression) is quite a bit

The solution to most "factors" questions on the R mailing list is to set the global option stringsAsFactors to F. Make it your part of your default R startup. Even better, do what we have done at Mayo for the last 10+ years and make it the default for your whole unit. (150+ users, 20+ years of S experience). We were one of the groups that whined to Insightful until they added this

Dear Terry, It's not surprising that different modeling functions behave differently in this respect because there's no articulated standard. Please see my response to Martin for my take on the singular.ok argument. For a highly sophisticated user like you, singular.ok=TRUE isn't problematic -- you're not going to fail to notice an NA in the coefficient vector -- but I've