similar to: Problem with making Matrix

Hi R usrs, I want to build R-2.10.0 on HP-UX, but I got following error message: ld: Unsatisfied symbol "zgemm" in file CHOLMOD.a[cholmod_l_super_numeric.o] ld: Unsatisfied symbol "zgemv" in file CHOLMOD.a[cholmod_l_super_solve.o] ld: Unsatisfied symbol "zherk" in file CHOLMOD.a[cholmod_l_super_numeric.o] ld: Unsatisfied symbol "ztrsm" in file

I'm sorry for having to post this, but I've run out of ideas. I've been trying to build R-2.8.1 from source for installation on FreeBSD 6.4 (seems to be working fine on osx) and keep getting the same results, regardless of how I set ./configure $ ./configure --enable-R-shlib --with-x=no --with-blas FFLAGS="-fpic" R is now configured for x86_64-unknown-freebsd6.0 Source

Trying to compile the package Matrix_0.9975-11.tar.gz with newest R-2.5.0 alpha (2007-03-31 r40986) on FreeBSD 7.0-CURRENT (i386) I get the following error: ----- R CMD INSTALL Matrix_0.9975-11.tar.gz * Installing to library '/usr/local/lib/R/library' * Installing *source* package 'Matrix' ... ** libs ** arch - "Makefile", line 10: Missing dependency operator

Hi all, I have trouble to compile Matrix packages on Solar10 x86-64 with Sun compilers. I saw some postings on this but am not sure how to solve this problem. It is becoming critical as I cannot install biocLite() because of its dependency on Matrix. Could you direct me how to resolve the issue? Thanks in advance! Dongseok R version 2.8.1 (2008-12-22) Copyright (C) 2008 The R Foundation for

Dear R-Help list: I'm using the Matrix library to operate on 600 X ~5000 element unsymmetrical sparse arrays. So far, so good, but if I find I need more speed or functionality, how hard would it be to utilize other sparse matrix toolsets from within R, say MUMPS, PARDISO or UMFPACK, that do not have explicit R interfaces? More information on these is available here

Hi, I have installed Dovecot 1.0.0 on a FreeBSD6.0 machine with Exim 4.66 and Vexim 1.5. When I restart the machine, dovecot does not load properly. The logs of /var/log/maillog are as: May 8 00:10:32 lhr dovecot: pop3-login: No authentication sockets found May 8 00:10:32 lhr dovecot: child 11478 (login) returned error 89 May 8 00:10:34 lhr dovecot: imap-login: No authentication sockets

Hi, we have installed R-2.8.1 using the current pgi compiler (8.0.2) for AMD64 on a SLES9 system. When I try to install "Matrix" everything is fine until the last step. make[1]: Leaving directory `/tmp/R.INSTALL.TW3399/Matrix/src/AMD' pgCC -L/usr/lib64 -L/usr/X11R6/lib64 -pgf90libs -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o

I recently uploaded a developmental version of the Matrix package, Matrix_0.6-1.tar.gz, to CRAN where it is in the src/contrib/1.9.0/Other directory. It requires some of the packages that will appear in R-1.9.0. This version marks a major redesign of the Matrix package to use S4 classes and methods and to incorporate sparse matrix manipulations using routines from TAUCS

64-bit R-2.12.0 was installed on Sun SPARC Solaris 10. Compiler used is solstudio12.2. Attached is the configure script. I then tried to install a recommended package called Matrix. The compilation failed with the following messages, ....... CC -library=stlport4 -G -L/opt/csw/lib/sparcv9 -L/opt/solstudio12.2/prod/lib/v9 -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o

Dear Developers, motivated by the new Sun Studio checks I compiled R-devel and several of our packages with Sun Studio 12 on Fedora x64. Everything worked fine and R-devel runs, with the exception of package Matrix where compilation crashes with the following message. The error occurs during building of the recommended packages and also if Matrix is compiled separately: [...] CC -G -lCstd

Hello, I have been attempting to run a poisson glmm using lme4 for some time now and have had a lot of trouble. I would say 9 times out of 10 I receive the following warning: CHOLMOD warning: %h Error in mer_finalize(ans) : Cholmod error `not positive definite' at file:../Cholesky/t_cholmod_rowfac.c, line 432 My data are counts of microbe colony forming units (CFUs) collected from

I have spent a couple of days and quite some time during the nights googling and experimenting in pursuing subject objective and I feel like failing, if I cannot get competent help: My objective: boot a FreeBSD-package over the network by Systems lacking HW-Support for PXE My Testconfiguration: Server IBM-PC300 Client Siemes Fujitsu ErgoPro with freeBSD6.0 installed Network card in

Hi, I am getting a warning message when I am fitting a generalized linear mixed model (m1.2 below). CHOLMOD warning: matrix not positive definite Error in objective(.par, ...) : Cholmod error `matrix not positive definite' at file:../Supernodal/t_cholmod_super_numeric.c, line 614 Any idea? Thanks for your help, Reza > sessionInfo() R version 2.4.1 (2006-12-18) i386-pc-mingw32

I have a pretty large sparse matrix of integers: > dim(tasa) [1] 91650 37651 I need to add one to it in order to take logs, but I'm getting the following error: > tasa = log(tasa + 1) CHOLMOD error: problem too large Error in asMethod(object) : Cholmod error `problem too large' I have 2 Gb of RAM, and the current workspace is barely 300mb. Is there any workaround to this?

I have a pretty large sparse matrix of integers: > dim(tasa) [1] 91650 37651 I need to add one to it in order to take logs, but I'm getting the following error: > tasa = log(tasa + 1) CHOLMOD error: problem too large Error in asMethod(object) : Cholmod error `problem too large' I have 2 Gb of RAM, and the current workspace is barely 300mb. Is there any workaround to this?

Dear R-users, I'm new to R, so my apologies if this question doesn't make sense. I've tried the following model in lmer, and it works perfectly: model<-lmer(aphids~densroot+zone+(1|zone/site), family=quasipoisson) But if I try the exact same model with a different variable, totmas, the model looks as follows: model<-lmer(aphids~totmas+zone+(1|zone/site), family=quasipoisson)

Hi All, I want to build R-2.10.0 on HP-UX, but I got following error message: ld: Unsatisfied symbol "zgemm" in file CHOLMOD.a[cholmod_l_super_numeric.o] ld: Unsatisfied symbol "zgemv" in file CHOLMOD.a[cholmod_l_super_solve.o] ld: Unsatisfied symbol "zherk" in file CHOLMOD.a[cholmod_l_super_numeric.o] ld: Unsatisfied symbol "ztrsm" in file

Hi: I was trying to use apply on a sparse matrix from package Matrix, and I get the error: Error in asMethod(object) : Cholmod error 'problem too large' at file ../Core/cholmod_dense.c, line 106 Is there a way to apply a function to all the rows without bumping into this problem? Here is a simplified example: > dim(sm) [1] 72913 43052 > class(sm) [1] "dgCMatrix"

This is a Request For Comment, also BCCed to 390 package maintainers of reverse dependencies of the Matrix package. Most users and package authors working with our 'Matrix' package will be using it for numerical computations, and so will be using "dMatrix" (d : double precision) matrix objects M, and indirectly, e.g., for M >= c will also use "lMatrix" (l:

I am encountering segfaults when checking the lme4 package on an Athlon64 system if I use the acml blas. R was built as a 64-bit application using the GCC 4.0.3 compiler suite including gfortran. The version of acml is 3.5.0 gfortran64. I do not encounter the segfaults when I compile R with R's built-in BLAS. The errors occur in the first example in lme4 in a call to lmer. It looks like