similar to: installing Rmpi

Rmpi is not currently available on CRAN, and I don't think it has been for a few months. It is available at http://www.stats.uwo.ca/faculty/yu/Rmpi/ Does anyone know its current status? A few months ago I corresponded with the author, who noted some build problems (specifically on Debian) were the hang up, and seemed to be working on it. I wasn't able to get it to work then (on a

I'm having trouble with R CMD INSTALL Rmpi_0.5-5.tar.gz --configure-args=~/lam lam is is installed locally. lamboot -d (or lamboot-d and also recon) works. make -k check from the lamtest suite passes all tests. Is this is problem with the -fPIC compiler as in the message? Should it be modified in the Makefile? Any help or comments are appreciated, thanks. * Installing to library

Has anybody tried to use Rmpi with the OpenMPI library instead of LAM/MPI? LAM appears to be somewhat hardcoded in the Rmpi setup. Before I start to experiment with changing this, has anybody else tried Rmpi with non-LAM MPI implementations? Dirk -- Hell, there are no rules here - we're trying to accomplish something. -- Thomas A. Edison

Dear R Gurus: Is there a problem with Rmpi on x86 with SUSE 10.1, please? I've tried everything and it still won't load. Has anyone else dealt with this please? Thanks, Edna Bell

Many thanks to Dr Yu for updating Rmpi for R 2.6.0, and for starting to make the changes to support Open MPI. I have just built the updated Debian package of Rmpi (i.e. r-cran-rmpi) under R 2.6.0 but I cannot convince myself yet whether it works or not. Simple tests work. E.g. on my Debian testing box, with Rmpi installed directly using Open Mpi 1.2.3-2 (from Debian) and using 'r' from

I try to install Rmpi as root with install.packages("Rmpi"). It fails with: ... checking for x86_64-pc-linux-gnu-gcc -std=gnu99 option to accept ISO C89... none needed I am here /usr and it is OpenMPI Trying to find mpi.h ... Found in /usr/include Trying to find libmpi.so or libmpich.a ... Found libmpi in /usr/lib checking for openpty in -lutil... yes checking for main in -lpthread...

Hi, I've been trying here to install Rmpi on an SGI IA-64 machine with 64 processors, running SuSE Linux Enterprise Server 9, R 2.4.0 and lam-mpi 7.1.3. While I've read of similar problems on this list, I think I've got an entirely new set of error messages to contribute (see below). I'm not sure what the actual error is and what the @gprel relocation message is about. Any help

The proper use of SPRNG is a little unclear to me in each of these packages, even more so when I put them all together. My immediate question: in snow I did clusterSetupSRNG. If a later want to (re) set the system to a known seed, how do I do it? That is, I want each distributed process to recreate exactly the same random numbers that it did before; I assume SPRNG assures the streams are

Ive tryed this: R CMD INSTALL Rmpi_0.5-2.tar.gz But occurred this error: gcc -shared -L/usr/local/lib64 -o Rmpi.so conversion.o internal.o RegQuery.o Rmpi.o -lmpi -llam -lutil -lpthread -L/usr/local/lib64/R/lib -lR /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.3/../../../../x86_64-suse-linux/bin /ld: /usr/local/lib/libmpi.a(infoset.o): relocation R_X86_64_32 can not be used when making a shared

Hello everyone im trying to install Rmpi library on centos 6. I have already installed mpich2 1.4 [root@localhost ~]# R --version > R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows" > Copyright (C) 2012 The R Foundation for Statistical Computing > ISBN 3-900051-07-0 > Platform: x86_64-redhat-linux-gnu (64-bit) [root@localhost ~]# mpich2version > MPICH2 Version:

Hi, I was trying to install the package Rmpi on a hpc cluster running SGE. The command, and the sessionInfo() is as follows: =========================================== > install.packages("Rmpi",dependencies=TRUE) also installing the dependency ‘rsprng’ trying URL ' http://www.ibiblio.org/pub/languages/R/CRAN/src/contrib/rsprng_1.0.tar.gz' Content type

Dear R People: I'm trying to install Rmpi (latest version) on Ubuntu. However, I'm getting the following error: erin at erin-Y480:~$ R R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows" Copyright (C) 2012 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are

Hello everyone, I've been fiddling around with the snow and Rmpi packages on my new Intel Mac, and have run into a few problems. When I make a cluster on my machine, both slaves start up just fine, and everything works as expected. When I try to make a cluster including another networked machine it hangs. I've followed the suggestions at

Hi, I'm testing affyPara on Debian lenny with R 2.7 from unstable, and the corresponding bioconductor packages from bioconductor.org downloaded using biocLite as per usual. The command cl = makeMPIcluster(k) succeeds, but spawns k R slaves which promptly soak up all available CPU, which is odd since they are not doing anything yet. This looks like a bug to me. Similar behaviour is shown

Hi R Gurus. I'm trying to install the Rmpi package. Here are the errors: checking for stdint.h... yes checking for unistd.h... yes checking mpi.h usability... no checking mpi.h presence... no checking for mpi.h... no Try to find libmpi or libmpich ... checking for main in -lmpi... no libmpi not found. exiting... ERROR: configuration failed for package 'Rmpi' ** Removing

Dear all, I have used the Rmpi package many times before however this time I've installed it as I always do with openMPI tar.gz file direct from the website. I'm installing on my ubuntu 8.10. Linux 2.6.27-11-generic #1 SMP Thu Jan 29 19:28:32 UTC 2009 x86_64 GNU/Linux All i get is: > library(Rmpi) Segmentation fault :~$ Which dumps me back into the shell, and doens't give me much

Hi guys, I've spent a few days trying to install Rmpi with no luck. I originally tried using mpich, moved on to mpich2, and then to openmpi. I've gotten the furthest with openmpi, though am still running into this problem and can't figure it out. Can someone help!? Thanks so much in advanced. I'm using an HP Envy laptop with Ubuntu 12.04. Output is below, with the error at the

Hello everybody, I am trying to install Rmpi on 64-bit HP-Proliant server. I am facing the following error: * Installing *source* package 'Rmpi' ... Try to find mpi.h ... Found in /usr/local/mpich-1.2.7p1/include Try to find libmpi or libmpich ... Found libmpich in /usr/local/mpich-1.2.7p1/lib Try to find liblam ... checking for main in -llam... no liblam not found. Probably not LAM-MPI

Dear All, I am trying to install Rmpi on AMD 64 with Fedora Core 2 for x86_64, but I receive the following error: /usr/bin/ld: /usr/lib/gcc-lib/x86_64-redhat-linux/3.3.3/../../../../lib64/libmpi.a(abort.o): relocation R_X86_64_32 can not be used when making a shared object; recompile with -fPIC /usr/lib/gcc-lib/x86_64-redhat-linux/3.3.3/../../../../lib64/libmpi.a: could not read symbols: Bad

After several trial and error attempts, I managed to install the Rmpi package without error on my Linux machine, running Fedora 5. I installed lam-7.1.2, lam-devel-7.1.2 and R-2.4.1, R-devel-2.4.1 The Package Rmpi_5.0-3.tar.gz, I installed once from within R and once from the command line to make sure, I link the right libraries: R CMD INSTALL Rmpi_5.0-3.tar.gz