similar to: lme and lmer syntax

r-help at stat.math.ethz.ch on Wednesday, October 26, 2005 at 6:00 AM -0500 wrote: Ronaldo, Try Harold's suggestion. The df still won't agree, because lmer (at least in its current version) just puts an upper bound on the df. But that should be OK, because all those t tests are approximations anyways, and you can get better confidence intervals (credible intervals, whatever) by using the

Hi! How to calculate the correct SE of mean in a nested or spliplot anova? Nested example: --------------------- m <- aov(Glycogen~Treatment+Error(Treatment/Rat/Liver)) > m Call: aov(formula = Glycogen ~ Treatment + Error(Treatment/Rat/Liver)) Grand Mean: 142.2222 Stratum 1: Treatment Terms: Treatment Sum of Squares 1557.556 Deg. of Freedom 2 Estimated

Hello R-help, I'm studying an example in the R book.? The data file is available from the link below.http://www.bio.ic.ac.uk/research/mjcraw/therbook/data/fertilizer.txt Could you explain Why the results from lme() and lmer() are different in the following case? In other examples, I can get the same results using the two functions, but not here...? Thank you.Miya library(lme4)library(nlme)#

Hi, we have a split-plot experiment in which we measured the yield of crop fields. The factors we studied were: B : 3 blocks I : 2 main plots for presence of Irrigation V : 2 plots for Varieties N : 3 levels of Nitrogen Each block contains two plots (irrigated or not) . Each plot is divided into two secondary parcels for the two varieties. Each of these parcels is divided into three subplots

Hi, I have the follow function: function() { ## Init of function ... for(i in test) { ... while(j <= test2) { ... } } } The problem is that sometimes, naturally, the while is not possible to be resolved, and so the program abort. In this case I need that program return to the init of function and run again. How I can make this? Abort the while, abort the for

Hi, I have some data that have this behaviour: | |******* | * | * | * | * |---------------- What is the best and simpler way to fit this in R? Thanks Ronaldo -- Ela pilotava um Continenal 2001 com igni????o autom??tica Magiclic... -- |> // | \\ [***********************************] | ( ?? ?? ) [Ronaldo Reis J??nior ] |>

Is possible to integrate this diferential equation: dN/dt = Nr(1-(N/K)) in R using the integrate() function? Or any other diferential equation? If yes, how? If no, anybody know any software on linux that make this? Inte Ronaldo -- O problema de ter os dois p??s bem firmes no ch??o ?? que voc?? n??o vai conseguir tirar as cal??as. --An??nimo -- |> // | \\

Hi, I have a little doubt about contrib packages. I make some little functions in a R package format, this functions are for my personal use (envelopes for glm models and a plot bar routine). Some friends ask me about the liberation of this functions in a web site, R contrib etc. what is the correct procedure for send a package to R contrib? The functions is not create for me, is adaptaded to R

Hi, anybody have the dataset used in Gamma Errors chapter of the Crawley's books (An Introduction to Data Analysis using S-Plus). specifically the functionalresponse and the Density datasets. Thanks Ronaldo -- For every problem there is one solution which is simple, neat, and wrong. -- H. L. Mencken -- |> // | \\ [***********************************] | ( ? ? ) [Ronaldo Reis

Hi, I make a upgrade to R 2.1.0 and in some analysis I give an error: anova(model,test="F") Analysis of Deviance Table Model: binomial, link: logit Response: landing/total Terms added sequentially (first to last) Df Deviance Resid. Df Resid. Dev F Pr(>F) NULL 16 105.079 trat 1 93.149 15 11.930 93.15 Warning message:

Hi, I try to make a vector in a for for loop, but it dont work. Look: > a <- 0;for(i in c(1:2)) { for(j in c(1:2)) { a <- i+j; print(a)}} [1] 2 [1] 3 [1] 3 [1] 4 I try to make this a vector, like this: [1] 2 3 3 4 > a <- 0;for(i in c(1:2)) { for(j in c(1:2)) { a[j] <- i+j}}; print(a) [1] 3 4 > a <- 0;for(i in c(1:2)) { for(j in c(1:2)) { a[i] <- i+j}}; print(a) [1]

Hi, I have an data like this x <- c(1:11) y <- seq(245,445,20) I make a plot plot(x,y) The first y value in y axis is 250 and the last y valeu is 450, the spacing between values are 50, so the y values showed are: 250, 300, 350, 400, 450 I need that values in y axis are: 240, 280, 320, 360, 400, 440, 480. I try plot(x,y,yaxp=c(240,480,6)) dont work I try

Hi, I have a new (for me) situation. I have a function for one linear model: y = 9.7909-0.035*x I have the variance of system var = 13.01403 Is possible to create a random vector points of Y (simulating the real data) over this curve using the function and the variance? I need this to a discipline. I have this: | \ | \ -> y = 9.7909-0.035*x and var = 13.014 | \ | \ | \ | \

Hi, I have these vectors: > WEEK <- rep(c(1:52),2) > YEAR <- rep(c(2000,1999),c(52,52)) How to make a vector of Date with weeks in years? I try as.date from survival package, but it dont work with weeks, just only with days, months etcs. Thanks Ronaldo -- "Realmente minha cidade e muito facultativa" --Elivelton, ao rep?rter da Jovem Pan que falava das muitas

Hi, I make an analysis and depending of the order of the variables, the significance change, look. m1 <- glm((infec/ntot)~idade+sexo+peso,family=binomial,weights=ntot) > anova(m1,test="F") Analysis of Deviance Table Model: binomial, link: logit Response: (infec/ntot) Terms added sequentially (first to last) Df Deviance Resid. Df Resid. Dev F Pr(>F)

Hi all, I try to test a linear slope using offset. I have: > m2 <- glm(Y~X*V) > summary(m2) Call: glm(formula = Y ~ X * V) Deviance Residuals: Min 1Q Median 3Q Max -2.01688 -0.56028 0.05224 0.53213 3.60216 Coefficients: Estimate Std. Error t value Pr(>|t|) (Intercept) 1.3673 0.8476 1.613 0.119788 X

Hi, exist in R or any other program for linux that estimate the best fit for data using severals functions? Somethink like tablecurve Thanks Ronaldo -- Um menino-prodigio e uma crianca cujos pais tem muita imaginacao. -- Jean Costeau -- |> // | \\ [***********************************] | ( ?? ?? ) [Ronaldo Reis J??nior ] |> V [UFV/DBA-Entomologia

Hi, look this: > summary(fam??lia) Anacardiaceae Annonaceae Bombacaceae Cecropiaceae 2 4 1 3 Chrysobalanaceae Clusiaceae Euphorbiacaea Fabacea 1 1 4 3 Fabaceae Flacourtiaceae Humiriaceae indeterminada

Hi, I'm try to use the SJava package. The install is OK. In R I have this error message: -------------------------- > library(SJava) Error in dyn.load(x, as.logical(local), as.logical(now)) : unable to load shared library "/opt/lib/R/site-library/SJava/libs/SJava.so": libRSNativeJava.so: cannot open shared object file: No such file or directory Error in

Hi, I''m trying to understand the lme output and procedure. I''m using the Crawley''s book. I''m try to analyse the rats example take from Sokal and Rohlf (1995). I make a nested analysis using aov following the book. > summary(rats) Glycogen Treatment Rat Liver Min. :125.0 Min. :1 Min. :1.0 Min. :1 1st Qu.:135.8