Displaying 20 results from an estimated 12000 matches similar to: "iterative output to file by row"
2005 Sep 29
2
memory issues with large data set
Hi,
I am running R 2.0.1.1. on Windows. It is a Dell Dimension with a 3.2 Ghz Processor and 4Gb RAM.
When using the ReadAffy() function to read in 97 arrays, I get the below error messages:
Error: cannot allocate vector of size 393529
Reached total allocation of 1024Mb: see help(memory.size)
When I use the comman "memory.limit(size=4000)" to increase the memory size to the
2008 Aug 20
4
Looping over groups
Hello,
My R skills are somewhere between novice and intermediary, and I am hoping that some of you very helpful forum members, whom I've seen work your magic on other peoples' problems/questions, can help me here.
I have a matrix with the following format:
(i) individual plants comprising many different genotype groups (i.e., a plant is genotype 1 or genotype 2 or genotype 3, etc). The
2007 May 14
1
optim bug (PR#9684)
Full_Name: Christina Merz
Version: R version 2.5.0 (2007-04-23)
OS: mingw32
Submission from: (NULL) (213.70.209.132)
R> version
_
platform i386-pc-mingw32
arch i386
os mingw32
system i386, mingw32
status
2004 Aug 01
2
Strange Problem with "proj" and "aov" for split-plot analysis output
I'm using R 1.8.1 on Red Hat Linux 9. I've worked out the linear model
decomposition by hand. Using "aov" with "Error" to fit a split-plot
model, I get very different results depending on whether I use the
"data" argument for "aov" or not. When I use the "data" argument, the
ANOVA table from "summary" is correct but the
2008 Nov 18
1
Tukey HSD following lme
Hi everyone
I'm using Tukey HSD as post-hoc test following a lme analysis. I'm
measuring hemicelluloses in different species treated with three
different CO2 concentrations (l=low, m=medium, h=high). The whole
experiment is a split-plot design and the Tukey-function from the
package multcomp is suitable for lme-analysis with random factors.
The analysis works fine but I get a non
2009 Sep 28
2
creating vectors from a list
Hi guys,
I have a list of 250 numbers as a result of using the ?by function!
List of 246
$ 0 : num [1:28] 22 11 31...
$ 1 : num [1:15] 12 14 9 ...
..
..
..
- attr(*, "dim")= int 250
- attr(*, "dimnames")=List of 1
The problem is that each list of 250 has different length! I would like to get the values of each list in a vector like vector_0 = (22,11,31,..), is this
2009 Sep 29
1
Comparing vectors from lists
Hi guys,
I still did not solve my problem properly! I have to compare the values of two lists of 250 numbers as a result of using the ?by function!
List1 of 250
$ 0 : num [1:28] 22 11 31...
$ 1 : num [1:15] 12 14 9 ...
..
..
..
- attr(*, "dim")= int 250
- attr(*, "dimnames")=List of 1
List2 of 250
$ 0 : num [1:24] 20 12 22...
$ 1 : num [1:17] 11 12 19 ...
..
..
2007 Jul 19
2
Subsetting dataframes
Dear all!
W2k, R 2.5.1
I am working with an ongoing malting barley variety evaluation within
Sweden. The structure is 25 cultivars tested each year at four sites, in
field trials with three replicates and 'lattice' structure (the replicates
are divided into five sub blocks in a structured way). As we are normally
keeping around 15 varieties from each year to the next, and take in 10 new
2005 Feb 18
7
export to text file
I'm trying to export a large data frame to a text file for permanent
storage. The only thing I could find was the treeglia Package but that
didn't work. Any suggestions?
Thanks!
Christina D Smith
PhD Student, GRA
Statistics Department
Kansas State University
2010 Mar 30
1
question on creating zoo object from indexed time series: re-arranges dates
Dear all,
I have a time series of daily measurements that starts like this:
KWhourly[1:10,]
Date Time Value
01/01/13 00:00:00 1.6
01/01/13 01:00:00 1.6
01/01/13 02:00:00 1.6
01/01/13 03:00:00 1.6
01/01/13 04:00:00 1.6
01/01/13 05:00:00 1.6
01/01/13 06:00:00 1.6
01/01/13 07:00:00 1.6
01/01/13 08:00:00 1.6
01/01/13 09:00:00 1.6
I am trying to get average daily,
2007 Jan 22
2
tdm400p not working with brazilian lines
Hi,
I'm installing an Asterisk box with a TDM2400P in Brazil. I can make
analog phones work while lines are not working. Since I do not know
anything about brazilian lines, is there anybody who can tell me what is
wrong/missing in my conf files (below)?
TIA
Giorgio
_zaptel.conf:_
fxoks=9-16
fxsks=17-24
defaultzone=br
loadzone=br*
*
_zapata.conf:_
context = inbound_zap
echocancel = 128
2005 Sep 27
2
Speex ver 1.1.10 decoder problem
OK, that was a stupid error in the le_int prototype. It's fixed in svn
now.
Jean-Marc
Le mercredi 28 septembre 2005 ? 11:53 +1000, Jean-Marc Valin a ?crit :
> OK, it seems like I screwed up the wav header code between 1.1.8 and
> 1.1.9. Everything seems fine (playing to soundcard also works), except
> that the length reported for the wav is too short, which is why it stops
>
2005 Jan 05
3
Sending DTMF to PSTN problem with SIP
Dear All ~
I have * setup & running ok (with two Wildcard X100P's to PSTN). I also have
two analog phones connected into same through a SIPURA 2000. These work fine,
except that when I call out through PSTN & try to send DTMF tones to (say) a
remote PBX to dial an extension, the gain seems to go wild (high), and the
DTMF tones are not recognized at the other end.
I tried setting the
2008 Nov 06
2
How to return individual equation from {aidsEst} in package [micEcon]?
Hi, R core team
I am using the function {aidsEst} in package [micEcon] to do an AIDS
model now. So far, everything is good. But I want to test the auto
correlation and heteroskedasticity of the individual equation from AIDS
demand system. How can I return the individual equation?
PS: serial correlation test is {bgtest} in package [lmtest] and
heteroskedasticity is {bptest} in package
2003 Mar 07
1
rsync transfer efficiency
Hi,
Does anyone have the data of the rsync transfer speed vs. other tools like ftp?
Or where is the place to find such information that compare the transfer speed
between different tools?
If I were to transfer a single large file, say 500Mega Byte, previously
non-existent on the remote host, what would be the fastest tool I can choose for
transfer?
Thanks,
Christina Li
2009 Jan 08
1
VCOV Source Code
Dear R Help,
I wonder the way to show the source code of [vcov] command. Usually, it
can show the source code after input the command and enter. But for
[vcov], it shows
function (object, ...)
UseMethod("vcov")
<environment: namespace:stats>
I appreciate for your help. Best wishes.
Christina
[[alternative HTML version deleted]]
2011 Feb 09
1
Error running LME model
I'm attempting to run an LME model with random intercepts for location and have received an error message. The model and error message are given below:
> mixed.distance <- lme (fixed= log(min5inpnc) ~ i93centerline, random=~1|location, data = nosmokecomp)
Error in y[revOrder] - Fitted : non-conformable arrays
I believe that my dataset may have dimensions that are not working with
2008 Dec 16
1
Cointegration and ECM in Package {urca}
Dear R Core Team,
I am using package {urca} to do cointegration and estimate ECM model,
but I have the following two problems:
(1) I use ca.jo() to do cointegration first and can get the
cointegration rank, alpha and beta. The next step is to test some
restrictions on beta with blrtest(),bh5lrtest(), and bh6lrtest(). But
none of them can add restrictions on all the cointegration
2009 Aug 14
1
Saving Iterative Components
Dear All,
I am trying to iterate an iterative process (i know R is not the best place
for so much looping but i have to so tough!) and store the resulting data
from each iteration to then be graphed. In simple form the script looks like
this
for(i in tracks)
{
a <- (subset(data, data$Id==i))
result.dataset <- function(a, other.arguements)
### this function is the other
2006 Aug 26
1
Capture of iterative integration output
Hello,
I am a novice R user and am having difficulty retrieving the values
from 21 iterations of the R function integrate.
The only way I have found is to do a write.table and then a read.table
as shown in the code below. I would rather capture the 21 values inside
the braces ( sapply might work, but I can't set it up without getting an
error in function) so I could compute the