similar to: Bioconductor and R-devel

On Fri, 2018-05-18 at 14:44 +0200, Micha Ballmann via samba wrote: > Is it possible to Mix Samba 4.8.2 with Samba 4.7.7? > > I have three domain controller (up to 10000 users) running on Samba 4.7.7. > > I want to kill all samba processes of Dc1 and do all necessary steps for an upgrade to version 4.8.2. Dc2 and Dc2 still running and providing. > > After a reboot of the

Dear all, I was trying to normalize a subset of affy data those transcribe are either P or M (called pm_filter). I am able to normalize pm_filter subset by using RMA method, however MAS5 is not working. For RMA method, I used the following commend: est<-rma(affydata, subset=pm_filter). Could any help me; how do I do this by using MAS5 method? Regards, Anup Som -- Dr. Anup Som,

Hello everybody, I am trying to use mas5 to normalize some array data and using mas5 and mas5calls. But I received these warning message. If anybody can explain the problem I would really appreciate that. Thanks in advance. background correction: mas PM/MM correction : mas expression values: mas background correcting...Warning message: 'loadURL' is deprecated. Use 'load(url())'

Hi everybody, I have a problem when trying to do the quality control with the packages simpleaffy and affyQCReport with the drosophila chip 2.0 At first I got the messeage, that the *.qcdef file is not there. I followed the instructions in tha manual and created the file like that: array drosophila2cdf alpha1 0.05 alpha2 0.065 spk bioB AFFX-r2-Ec-bioB-3_at spk bioC AFFX-r2-Ec-bioC-3_at spk bioD

Dear Madam/ Sir, I am using?R version 3.4.2.?I want to analyse microarray data. when I want to install "simpleaffy" package I get this error "package ?simpleaffy? is not available (for R version 3.4.2)". I have the same problem with?R version 3.3.2. Could you please help me to solve it? I am working with RStudio 0.99.903.exe. I also have problem in getting the new release of

Hi.... I am assembling an R package (under Windows XP, R v.2.3) and have a very basic question. Running R CMD build does not generate a pdf. R CMD check generates a .dvi, but I cannot figure out how to automatically create the pdf. I thought from reading the "writing r extensions' manual that R CMD build was supposed to generate the pdf. I am having no success using various

thomas weidner wrote: > Hello, > > i want to implement a common lisp subset using llvm for fun. Out of curiousity, for which CL implementation is this targeted? sbcl? Or something you're rolling? The reason why I ask is that I expressed an outrageous opinion at Supercomputing back in November, to wit, that CL is probably the best language suited for today's multicore

Hello, After running R CMD check on my package I received the following error on package dependencies: * using log directory 'C:/z-zBackup/Nuvera Bio on Iatros01/Development/RPackages/nvNormalize/nvNormalize.Rcheck' * using R version 2.9.1 (2009-06-26) * using session charset: ISO8859-1 * checking for file 'nvNormalize/DESCRIPTION' ... OK * checking extension type ... Package *

Hi.... I have a question about how to increase my memory size, could someone answer it for me?? I am using Bioconductor in R to calculate gene expression values with mas5, dchip, and mas4. I have only 18 samples, all from Affymetrix U133A Plus 2 arrays, which has ~54,000 genes. My machine equipments are: CPU P4 3.0GHz, and 1GM RAM. Somehow when I was running mas5 in R, it always showed the error

Hi, I'm using a command in bioconductor that seems to require a package called hu6800cdf. I've installed this properly but I still get the same error: Could not find array definition file ' hu6800cdf.qcdef '. Simpleaffy does not know the QC parameters for this array type. See the package vignette for details about how to specify QC parameters manually. I've tried specifying

Hi all.. I'm very new R, and i'm analyzing microarray data using Bioconductor.. Recently i was given microarray data to analyze. The problem is whenever i run MAS5 presence calls algorithm, it throws an error saying NA/NaN/Inf in foreign function. How do i remove such NA/NaN/Inf's ?? I tried na.omit(dataframe) but stil problem exists. dimension of matrix (data) is 35556 7. >

One idea for a hacking session would be a "performance analysis workshop". People could bring their apps, we could sample them track down what part of the compiler would need to change and code it up (if time allowed). Given the trade offs involved, it could be helpful to many folks, the trick is to get the right people to show up. -Chris On Nov 20, 2011, at 2:10 PM, Joe Abbey

Hi, I decided to upgrade to 1.8 today... :-) Anyway, we are writing our own package that is dependent on a bioconductor library - 'affy'. I've checked and when I fire up R, library(affy) behaves as expected... so it all seems to be installed and OK... In the DESCRIPTION file in my package source I have the line: Depends: affy When I run R CMD check simpleaffy I get to: ... *

On 11/20/2011 4:33 PM, Chris Lattner wrote: > One idea for a hacking session would be a "performance analysis > workshop". People could bring their apps, we could sample them track > down what part of the compiler would need to change and code it up (if > time allowed). > > Given the trade offs involved, it could be helpful to many folks, the > trick is to get

David, Sorry I missed the Community Event Planning session. There was this neat session on Backend\Infrastructure competing with it. :) Whiteboards (with markers (and erasers?)). I was speaking with Dan G about the complexities of trying to get the SelectionDAG to represent physical registers. He mentioned during our conversation that a whiteboard would help. Ballroom Salon V would have

Hi John, While this is a good idea, wouldn't it logistically take longer to get the microphone to the person involved than for the presenter to repeat the question? Cheers, James From: llvmdev-bounces at cs.uiuc.edu [mailto:llvmdev-bounces at cs.uiuc.edu] On Behalf Of John Criswell Sent: 21 November 2011 05:07 To: llvmdev at cs.uiuc.edu Subject: Re: [LLVMdev] Suggestions for

On Nov 20, 2011, at 9:06 PM, John Criswell wrote: > On 11/20/2011 4:33 PM, Chris Lattner wrote: >> >> One idea for a hacking session would be a "performance analysis workshop". People could bring their apps, we could sample them track down what part of the compiler would need to change and code it up (if time allowed). >> >> Given the trade offs involved,

Hi again, I have been playing around with the order of loading packages, and as far as I can tell, there's nothing specific with affycoretools that's causing my Rgui to crash (i.e., shuts down and the Microsoft 'please send error report' box pops up). Instead, it has something to do with the order & type of packages that are loaded that add items to the menu bar by

Hello, i want to implement a common lisp subset using llvm for fun. This requires the use of a garbage collector. I read the docs, but many things are still unclear to me. 1. how are collectors supposed to find all living objects? there is llvm.gcroot for marking objects on the stack,but how do collectors crawl heap objects? I did not see a way to provide custom mark functions. Are

At first I would like to express the gratitude toward Oosting, J. and James MacDonal for their help solving the previous problem I posted on this forum. Now I have a new problem. I was trying to normalize set of microarray data on HGU133 paltform. I put all the HGU133A platform chips in one directory and all the other HGU133B chips on another directory. When I tried to normalized them using same