similar to: help files and vignettes

I had written a vignette and included a \usepackage{Rd} command to make it possible to include latex'ed Rd files in the vignette. However, when loading Rd.sty texShop produces the following error: l. 180 ...d}[1]{\ifmmode\bm{#1}\else\textbf{#1}\fi} This is on Max OS X 3.9 and R 2.0.1 Has anyone seen this before and/or is it problematic? I'm not sure whether the output suffers from this

Is there a package in R that handles general linear (in-)equality + box constrained optimization? If it is not there, could anyone advise me which way to go? And/or point me to packages that solve these problems partially? best, ingmar -- Ingmar Visser Department of Psychology, University of Amsterdam Roetersstraat 15, 1018 WB Amsterdam The Netherlands http://users.fmg.uva.nl/ivisser/ tel:

Hi All, Does someone have an idea of how to cleverly convert a categorical timeseries into a transition matrix? Ie, I have something like: x<- c(1,1,2,1,1,2,2,2,1,2), And I want a matrix with counts and/or probabilities: > tr <- matrix(c(2,3,2,2),2,2) > tr [,1] [,2] [1,] 2 2 [2,] 3 2 Meaning that there are two transitions from 1 to 1, two from 1 to 2, three from 2 to 1

Hi Tom, I am not entirely sure what the problem, you haven't been very specific. If you want general linear constraints on your parameters, ie linear combinations of parameters summing to some value, constrOptim may be of help. hth, ingmar Ingmar Visser Developmental Processes Research Group Department of Psychology University of Amsterdam http://users.fmg.uva.nl/ivisser/ -----Original

Dear R-helpers, I'm trying to transfer a loop from R code to C to improve performance using the .Call interface. However, I ran into problems before even getting started, and I hope (fear) I'm missing something completely obvious here. I use the following C function (passing an integer to the C function and printing it): #include <R.h> #include <Rinternals.h> SEXP

Dear All, When installing the Ruuid package (from Bioconductor) from sources on my MAC (OS X 10.3.5, R version 2.0.0) I get the following errors: m00245:~ ivisser$ R CMD INSTALL -l /Users/ivisser/Library/R/library/ /Users/ivisser/Desktop/Ruuid * Installing *source* package 'Ruuid' ... loading cache ./config.cache checking for glib-config... no checking how to run the C preprocessor...

Hi, When running R CMD check I'm getting a number of errors that I don't quite follow and don't know where to start looking for an answer, any hints appreciated. R CMD check trunk * checking for working latex ... OK * using log directory '/Users/ivisser/Documents/projects/ depmixProject/depmixNew/rforge/depmix/trunk.Rcheck' * using R version 2.6.2 (2008-02-08) * checking

If I execute R CMD Rd2dvi foo.Rd I get messages of the form: Converting Rd files to LaTeX ... foo.Rd Creating dvi output from LaTeX ... Saving output to 'foo.dvi' ... cp: .Rd2dvi4366/Rd2.dvi: No such file or directory Done xdvi-xaw: Fatal error: foo.dvi: No such file. Indeed if I add the --no-clean flag and then cd to the .Rd2dvi<whatever> directory, I find that there is no

Hi, I run into a problem with "R CMD Rd2dvi" command: it gives me "File `Rd.sty' not found" error (See the output message on the bottom). I get the same error when running "RCMD check". My system is: Windows 2000, R version 2.0.1, MiKTeX version 2.4. I do have a Rd.sty file in R_HOME/share/texm directory. I looked through newsgroups for any related discussions

Hi, The following command: R CMD Rd2pdf --no-preview --output=./tmp.pdf --title=test genefu-package.Rd run against this file: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/genefu/man/genefu-package.Rd (username: readonly; password: readonly) produces a very verbose error (see below) with R version 2.15.0 alpha (2012-03-07 r58622). The .Rd file has these lines in it: Version: \tab

Hi, I run R 2.5.1 on Mac OS 10.4.10 and fail to build a package manual. Below is the transcript. The problem is a "pdflatex: command not found" error but I think that I have a fully working latex install (installed with iInstaller) as I use TeXShop with no problem. Could someone help? Jean-Pierre -----------------------------------------------------------------------------

Dear all, I am getting an R CMD check warning about the PDF manual. I am having a hard time finding out what is wrong, here is the log of the Rd2pdf call. The full check (and other) log is at https://api.travis-ci.org/jobs/46373922/log.txt?deansi=true if anybody is interested, and the package itself is here: https://github.com/metacran/r-builder/tree/bintex/rbuildertest Thanks, Best, Gabor

I'm trying to use R CMD Rd2dvi and I end up at a Latex (I think) command prompt. What's missing or what am I suppose to do? Paul Gilbert _______ paul at breman:/apps/dse-versions/2000.6/dse#R CMD Rd2dvi syskern This is TeX, Version 3.14159 (Web2C 7.3) (Rd2.tex LaTeX2e <1998/12/01> Babel <v3.6k> and hyphenation patterns for american, french, german, ngerman, nohyphenation,

I use the lme function from the nlme library (or alternatively from the Matrix library) to estimate a random effects model. Both functions return the covariance matrix of the estimated parameters. I have the following question: Is it possible to retrieve the information matrix of such a model (ie from the fitted object)? In particular, the information matrix can be computed as a sum of individual

Dear R-helpers & Friedrich Leisch, I'm trying to fit a mixture of regression models on attached data set by doing the following: agl <- read.table("agl.txt") mod1 <- flexmix(resp~gng+csc|Subject,data=agl, model=FLXglm(family="binomial"),k=2) The result is a (varying) number of the following warnings: Warning messages: 1: non-integer #successes in a

Is there any way of getting just the LaTex output which R CMD Rd2dvi generates on the way to produces a .dvi file, which could then be incoorporated into another document? Thanks, Jonathan -- Dr. Jonathan Myles e-mail:jonathan.myles at mrc-bsu.cam.ac.uk MRC Biostatistics Unit Tel. 01223 330372 Institute of Public Health FAX 01223 330388 University Forvie Site

On the local machine the command R11 CMD Rd2pdf survfit.Rd works fine. R12 CMD Rd2pdf survfit.Rd fails with the message below. Converting Rd files to LaTeX ... survfit.Rd Creating pdf output from LaTeX ... Error in texi2dvi("Rd2.tex", pdf = (out_ext == "pdf"), quiet = FALSE, : Running 'texi2dvi' on 'Rd2.tex' failed. Messages: sh: texi2dvi: command not

I'm not sure what the usual "ping time" is for llvm-dev, but may I ask if there are any updates on this? It appears that the following lines are the root cause of the reordering (https://github.com/llvm/llvm-project/blob/fdcb27105537f77c78c4473d4f7c47146ddbab69/llvm/lib/Transforms/InstCombine/InstructionCombining.cpp#L2175): // Handle gep(bitcast x) and gep(gep x, 0, 0, 0). Value

Dear users, I'm struggling with encoding issues for documenting some functions. The Rd format is incradible simple, however, because I'm dealing with diacritic strings, I seted up encoding in several Rd files as latin1. Under R, using the checks available in the package 'tools it performs pretty well. But when check the package as cran, I got several encoding issues. Have any one

Hello everybody I'm am trying to build a pdf out of the Rd files that i wrote for a package, so that I can attach it to my thesis. if i Run Rd2pdf (or Rd2dvi) I get this error massage: Hmm ... looks like a package Converting Rd files to LaTeX . Creating pdf output from LaTeX ... Error in texi2dvi("Rd2.tex", pdf = (out_ext == "pdf"), quiet = FALSE, : Running