similar to: reshaping of data for barplot2

Dear All I am trying to graph a proportion and CI95% by a factor with ooplot (any other better solution ?) It works well until I try to add the confidence interval. this is the error message and and a description of the data: > dat1 PointEst TT1 1 3.6 TT2 2 5.0 TT3 3 5.8 TT4 4 11.5 TT5 5 7.5 TT5 6 8.7 TT7 7 17.4 > dat2

Hi, I am new to R. I have a matrix that I have assigned to the object ?colon?. > colon<-read.table("c:\\alon.txt",header=T,row.names=1) attach(colon) names(colon) The dimenstions are 2000 62. Each of the 62 columns (titled norm1, norm2, norm3, etc) has 2000 different numbers (?continuous? values) within it. I have also assigned a name for each of the 2000 rows of the

I'm using barplot2 to plot some data. Is there any way to determine the width of the bars in the generated plot? I know that barplot2 returns a list of the coordinates of the center of each bar, but since there is some white space between each bar, I don't know how to get the width of each bar. Jamie

Hi list, I'm using barplot2 form the gplots package to plot a few numbers (I want to add SD bars later). However, I would like the y-axis not to start from 0 but 500. When I add the parameters YLIM, something goes wrong. The graph is not 'cut off' at 500. Instead the bars seems to sink trough the bottom of the graph. Because its a little hard to explain, here is a self-containing

Hello, I would like to know if it's possible to modify the name of groups of bar because on my barplot2, I have 5 groups of bars and one of them is called "User Contributes" and when I save the plot "User contributes" is to big so I don't have it on my plot! Is it pssible to put the name vertically! Thanks! Sabine --------------------------------- ils, photos

Hello, I get a nice looking barplot using the barplot2 function in the gregmisc package: body2 <- barplot2(hh3, beside = TRUE, col = c("mistyrose", "lightcyan"), .... cex.names = 1.0, plot.ci = TRUE, ci.l = cil, ci.u = ciu, plot.grid = TRUE) box() However, obviously I lose the collors when converting from ps to a pdf (outside of R)

Dear R users, I am trying to build a barplot2 graph however I can't find a way of defining the scale for the x-axis. I would like to show in my x-axis only the numbers 0, 25, 50, 75 etc. (so far R is giving me a random scale hard to interpret and it doens't look nice...). Could anyone advise me on how to do this please, it would be a great help! Thank you. Below I show the code I have

Hi R-users, I inted to make multiple plots using for loop. The question is how can I adjust the left hand side margin of the plot according to the names.arg argument in barplot2. In every plot I have different annotations in the y axis and they vary in length. Now when I have fixed margins opar <- par(mar=c(3,15,0,2)... I get the same margins in all of the plots. That leaves lots of white

R-Users, I am working with gplots (in gregmisc bundle) plotting some posterior probabilities (using barplot2) of harvest bag limits for discrete data (x-axis from 0 to 12, data is counts) and I ran into a couple of questions whose solutions have evaded me. 1) When I create and include the confidence intervals, the lower bound of the confidence intervals for several of the posterior probabilities

Hello, I try to handle a simple bar-plot, but it turns out to be not as simple as I thought. 1) I have created a .dat-File, e.g. test.dat: DATA DATA-SEM 2.2 0.32 6.2 1.30 12.7 1.61 48.6 3.08 4.1 0.86 4.5 0.32 1.5 1.13 1.2 1.08 The first row is the data represented by bars. The second row deals with the Standard Error of Mean. The lines correspond to time-intervals of experiments. 2) I now

Hi all,I'm trying to build a SpatialLines object from a list that contains 124 river segments. Each segment in the list contains the x,y coordinates. I'm using the following code to create the SpatialLines object, but it just retrieves one segment. Any suggestions? test.func = function(x){ ??? for (i in 1:length(x)) {??????? tt[[i]] <- x[i]; tt[[i]]? = Line(tt[[i]]); tt[[i]]? =

Hi Ashraf, It is not obvious to me what your structures are but one problem in your function is the assignment tt1 <- SpatialLines(list(tt[[i]])). This will set tt1 to just have one item. Consider the following test.func <- function(x) { tt1 <- list() for ( i in ... ) { ... tt1[[i]] <- SpatialLines(tt[[i]]) } return(tt1) } HTH, Eric On Mon, Sep 25,

Hi Eric, Thanks for the help.But this will not solve the problem as it will generate a list and what I need is an object of class sp using SpatialLine function from sp package.So, I need to convert each matrix to coordinates and then to a line and then to a spatial line as figured in the code. My data structure is a list of 141 matrices.Each matrix represents coordinates of the river lines

I am the proud owner of a new laptop since my old one died the other day. Currently I have a dual-boot Windows 7 Home and Ubuntu 12.04 . I'll leave the Windows problems for another post. I know practically nothing about Linux so I am probably doing something stupid but ... at the moment I cannot seem read or write files in Ubuntu. I am not having any problem saving other documents to the

The following creates a time series tt1 whose values rise from 1 to 20 and another time series tt2 each of whose values are 10 larger than the corresponding value in tt1. When we attempt to bind them together as columns, the entry after Dec 1960 is erroneously listed as NA 1960 instead of Jan 1961. If n is changed to either 19 or is changed to 21 in the example below, the example suddenly

Hi, exist in any package a function which "work with sequences". Easy example 10 factors with 2 levels, are if i'm correct theoretical 2^10 "sequences" possible. But i have more than 2 levels and perhaps more than 10 factors and interested for the top10 "sequence's" with higehest freqs and wish to know which type of sequence it is. Many thanks for a

How can I extract only the time component from an POSIXlt object? For example if I try the following it still returns both the date and time... >as.POSIXlt(tr.date[1]) [1] "2010-10-18 21:46:53" >as.POSIXlt(tr.date[1],"%H:%M:%S") [1] "2010-10-18 21:46:53" round and trunc don't help... is there an "as.Time" equivalent to as.Date ? Thanks,

Hi, I was trying to get hyperlinks using xtable, but couldn't get the hyperlinks to function properly. For example, if I use ## Try to link NY times website to every figure in column 4 mat <- matrix(1:43,6,5) mat[,5] <- "http://nytimes.com" for(i in 1:nrow(mat)){ strr <- paste('<a href="', mat[i,5],'">', mat[i,4], '</a>',

Hi I try to use windbind rule to authenticate users in dovecot login procedure. /etc/nsswitch.conf file: passwd: files winbind shadow: files winbind group: files winbind when I try logon from my console to dovecot (pop3 server): # telnet komp14 110 Trying 10.10.10.38... Connected to komp.xxx.xxx (10.10.10.38). Escape character is '^]'. +OK Dovecot ready. user tt1 +OK pass xxxxxxxxx -ERR

Dear R users I am trying to exporting plots from R to an external folder, or to the working directory, but the resolution of plots (pdf file) largely reduced. Any way I can get same quality as my original plots?? e.g. I tested the plotting part using one example and obtained pretty good (/readable) quality for each plot in the (4*4) multiple graph. But when I did the loop and tried to export