Displaying 5 results from an estimated 5 matches similar to: "Problems with ecodist"
2008 Feb 19
1
rJava and matrices
Hi list,
I'm wanting to use a matrix as input to some java code, but I seem to be
unable to do this (See code below). When searching online for a solution I
found that rJava 0.5-2 (the version under development not yet in CRAN) is
adding "direct support for raw vectors as method parameters". Is this
related?
I also tried to use .jarray / .jcast in various combinations to no avail.
2011 Sep 25
4
Trouble creating and adjacency matrix
Hello all,
I'm having trouble creating an adjacency matrix.
Basically, I need to turn the following distance matrix into an adjacency
matrix based on whether values are >1.5 or not. If they are >1.5, then the
returned value should be 0. If they are =<1.5, then the returned value
should be 1.
DistanceMatrix:
A B C D E
[1,]
2011 Sep 26
3
Nearest neighbour in a matrix
Hello all,
I am brand new to R and doing an exercise for a class. I need to find the
nearest neighbour for points in the following matrix:
> DistanceMatrix
x1 x2 x3 x4 x5
[1,] 0.000000 2.828427 1.581139 2.236068 2.000000
[2,] 2.828427 0.000000 1.581139 4.123106 2.000000
[3,] 1.581139 1.581139 0.000000 2.549510 2.121320
[4,] 2.236068 4.123106 2.549510
2008 Jan 25
1
How to execute R code
Hi,
I have 'R' code in file. saved it as exmaple.r
here is the code.......
library("hopach")
GSE <- read.table("gene_expression_data",sep="\t",header=TRUE,row.names=TRUE)
gene.dist <- distancematrix(t(GSE),d="euclid")
gene.hobj <- hopach(t(GSE), dmat=gene.dist, mss="med")
labelstosil(gene.hobj$cluster$label,gene.dist)
I dont
2011 Jan 04
5
Help with "For" instruction
Hi,
I am having a problem in doing something similar to this example:
Suppose I have this vector a, and from it I wish to create 5 other vector
each one with less one value than what object a has
So I have "a"
a<-c(1,2,3,4,5)
and I want
a1 that shoud have (2,3,4,5)
a2 that should have (1,3,4,5)
a3 that should have (1,2,4,5)
a4 that should have (1,2,3,5)
a5 that should have