similar to: colorful venn diagram

I was wondering if anyone could help me figure out how to make a Venn diagram in R where the circles are scaled to the size of each dataset. I have looked at the information for venn (in gplots) and vennDiagram (in limma) and I cannot seem to figure out what parameter to change. I have looked this up online and do not seem to be seeing anyone else who has posted this question or the answer to it

Dear r-helpers, Here I would like to have your kind helps on generating Venn diagram. There are some packages within R on this task, like venneuler, VennDiagram, vennerable. But, vennerable can not be installed on my Mac book. It seems VennDiagram can not work on my data. And, venneuler may have generated a wrong Venn diagram to me. Do you have any experience/expertise on those Venn diagram?

Hello, I am a total beginner with ?R? and found a package ?venn? to create a venn diagram. The problem is, I cannot create the vectors required for the diagram. The manual say: "R> venn(accession, libname, main = "All samples") where accession was a vector containing the codes identifying the RNA sequences, and libname was a vector containing the codes identifying the

Hello All, I have a data.frame with this structure: m <- matrix(sample(c(rep('yes', 10, replace = TRUE), rep('no', 10, replace = TRUE), NA), 500, replace = TRUE), nrow = 100, ncol = 5) colnames(m) <- colnames(m, do.NULL = FALSE, prefix = "col") m <- as.data.frame(m) I need to generate a Venn diagram from this data.frame, displaying the various intersections of

Hi there, Is there a way to control the circle diameter in venn.diagram function of VennDiagram package? Thanks Mike [[alternative HTML version deleted]]

Dear list, When I use VennDiagram package, I got a error as follow: venn.plot <- draw.pairwise.venn( area1 = 3186, area2 = 325, cross.area = 5880); Error in draw.pairwise.venn(area1 = 3186, area2 = 325, cross.area = 588) : Impossible: cross section area too large. Does anyone have suggestion? Thank you.

I'm trying to plot Venn diagrams with more than 3 sets (5 actually) in order to describe graphically the genetic variation between populations. I tried the limma library but realised it can only plot 3 sets. Is there any solution? Of course I could plot the chart manually but it'll take too long (have other datasets)..... One of my dataset is given below. THanks for any advice. j

Hi there ! I've got 7 Samples that may contain 29 differents kinds of material.... every line below corresponds to a differente kind of material, example: Sample 1, 2,3,5 and 6 has material 1 .... So I want to know how can I do a Venn Diagram with the data below .... ps ( it was generated by a csv, where every line is sep with (";")) Can someone helps me ? thanks csv file :

http://r.789695.n4.nabble.com/file/n3312061/x_and_y_values.txt x_and_y_values.txt I have the absorbance values form HPLC Chromatogram. I need to find the peaks in datapoints and area under each peak. I am not sure how how to find the peaks, I tried couple of libraries and peak function but they return me a list of values which when computed from area turns out to be huge nnumbers. In the

R-developers: I'm beginning to work on a manuscript for a set of functions I developed for a package I have on CRAN (spatial.tools), and I'd like to rename a function in my package to give a better idea of what it does prior to manuscript submission -- is there a "safe" way to do a backwards-compatible rename of a function within a CRAN package (so functions that rely on the

Dear R-users I want to save a list with characters a point plot and a Venn diagram in a single pdf page. I am successful to do this when I use a character list and two point plots. However when I try to replace the first point plots with my Venn diagram (built with Vennerable package, compute.Venn() and plot.Venn()) the Venn plot will not position at the right place in the pdf. I guess there

Hi R users, I am wondering if it there is any R's function helping integrate venn diagram and pie chart to compare two related datasets. I know the package limma(bioconductor) has something built-in for making venn diagram, but I guess it would be very painful to use line and text to specify the proportions in the fashion of pie chart . Thanks in advance, Kevin Chang -- View this

Hello! I have this problem: I want to create a Venn's diagram with three lists of genes'names. The first is all the genome, the second a subset of it comprising all mitochondrial genes, and the third including all genes that correlate with a given gene. This is what I do: > library(gplots) > A<-read.delim("F:/.../mito genes just names.txt") >

Hi list, I have a question on how to identify the overlapped items from two vectors: >x<-c(0,1,2) >y<-c(1,2,2,3) and plot the number of the overlapped as well as non-overlapped in a diagram? Thanks much, Allen [[alternative HTML version deleted]]

Dear UseRs and DevelopeRs It would be helpful to see the color palette available in the venneuler() function. The relevant par of ?venneuler states: "colors: colors of the circles as values between 0 and 1" -which explains color specification, but from what pallette? Short of trial and error, i'd really appreciate if some one could help me locate a "0 - 1" pallette

Dear R-devs, Scenario: When checking a package via `R CMD check package_tar.ball`, required / suggested packages may be missing. R subsequently returns a list of packages that are missing (delimited by spaces). Example: ``` R CMD check glmSparseNet_0.99.13.tar.gz * using log directory '/home/ubuntu/Bioconductor/glmSparseNet.Rcheck' * using R Under development (unstable) (2018-06-06

Hello, I am plotting data as a venn diagram but would like to be able to control how it is plotted like a lattice object. Right now, it plots right away. I would like to name it and then plot at will. I thought to convert the whole thing to a PostScript file then get it back into R via grImport, but surely (please!) there must be a less roundabout way to do this. Any help is appreciated. Here

Hi all, my dovecot version is 2.2.13, quite standard configuration. Can I add directive LAYOUT=fs in dovecot configuration without losing all my archived messages? This should modify the separator of email folders from dots to slashes, correct? BR Stefano

I was wondering if you could lend me some advice in using the Vennerable package. I am having trouble creating the right sort of Venn function output. I have "TRUE" and "FALSE"/NA str(mutset) 'data.frame': 2310 obs. of 3 variables: $ TestResult.1 : chr NA NA NA NA ... $ TestResult.2 :chr NA NA NA NA... $ TestResult.3

Hi, I'm new to the list so apologies if this has been asked before. I couldn't find any refs in google. I recently installed the Vennerable library from Rforge, this required an upgrade of R to 2.10.0 by the 'pylr' dependency. However, a very simple command fails: Vcomb <- Venn(SetNames= c("EOCT", "EOCM"), Weight=c(0, 11841, 24084, 24660)) plot(Vcomb)