similar to: lmer() vs. lme() gave different variance component estimates

> library(MASS) > attach(bacteria) > table(y) y n y 43 177 > y<-1*(y=="y") > table(y,trt) trt y placebo drug drug+ 0 12 18 13 1 84 44 49 > library(lme4) > model1<-lmer(y~trt+(week|ID),family=binomial,method="PQL") Error in match.arg(method, c("Laplace", "AGQ")) : 'arg' should be one of

I am relatively new to R so I am not confident enough in what I am doing to be certain this is a bug. I am running R 2.1.1 on a Windows XP machine and the lme4 package version 0.98-1. The following code fits the model I want using the nlme package version 3.1-60. mltloc$loc <- factor(mltloc$loc) mltloc$block <- factor(mltloc$block) mltloc$trt <- factor(mltloc$trt) Mltloc <-

I use model comparison with glms without mixed effects with anova(modelA,modelB), with mixed effects glm (glmmPQL), this doesn't work. Is there a way to compare model fits with glmmPQL's? Paula M. den Hartog Behavioural Biology Institute of Biology Leiden Leiden University [[alternative HTML version deleted]]

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Hi, i have a problem to booting xen kernel. At system start i obtain the next message: gave up waiting for root device. common problems: boot args (cat /proc/cmdline) check rootdelay= (did the system wait long enough?) check root= (did the system wait for the righ device?) missing modules (cat /proc/modules: ls /dev) You have some idea to fix this problem? Many thanks. Bye

Hi, I've some problems with one of our samba fileserver (debian stable 3.0.14a-3sarge1). Every few weeks, I get the following error messages for all users that want to access/mount a share: [2006/03/16 08:52:53, 2] auth/auth.c:check_ntlm_password(312) check_ntlm_password: Authentication for user [PID51C9] -> [PID51C9] FAILED with error NT_STATUS_LOGON_FAILURE [2006/03/16 08:52:57, 1]

hi, first of all i have to say that i?m new to dovecot and to mailinglist. i?m trying to setup my owen imap-server on fc3, but i have some trouble with dovecot. wenn i try to log in with telnet lovalhost 143 /var/log/maillog says: dovecot-auth: BUG: login gave a PID of existing connection. can someone please give me an hint or a link to solve this problem. yours, martin.

Hi, periodically we are seeing the following error in our samba log. At this time nobody can connect to the shares of this server anymore. [2007/04/17 09:05:59, 2] auth/auth.c:check_ntlm_password(312) check_ntlm_password: Authentication for user [PID33C1] -> [PID33C1] FAILED with error NT_STATUS_LOGON_FAILURE [2007/04/17 09:06:03, 1] auth/auth_server.c:check_smbserver_security(263) the

Dear Madlene, while this list serves as a forum for discussions about R backports present on CRAN, this would be something preferably filed in the Debian bug tracking system bts.debian.org - could you file a bug there? But please don't ask me on which package - maybe Dirk has a good answer to that one... Cheers, Johannes P.S.: https://www.debian.org/Bugs/Reporting Am Dienstag, 16.

On 16 December 2014 at 14:45, Johannes Ranke wrote: | this list serves as a forum for discussions about R backports present on CRAN, The mandate, as I recall, is a little broader: "usage of R on Debian-based systems" As such, I found the post perfectly adequate. We redirect from r-help and other lists to here because it is the one focus point for all things related to Debian / Ubuntu

Hello, I'm using R to apply Fishers exact test to a whole pile of contingency tables, and I've run into the bug shown below. regards, Francis -- > dat1 = matrix(c(0,1,0,1,0,0,1,0,0,0,1,0,1,0,0,1,0,0,0,1,0,1,0,0,1,0,0,0,0, 1,1,0,0,1,0,0,1,0,0,1,0,0,3,0,0,2,0,0,1,0,0,0,1,0,0,2,0,0, 2,0,0,1,0,1,0,0,3,0,0,2,0,0,0,1,0,5,0,0,0,1,0,1,0,0), nrow=3) >

Hi guys. Anybody has seen something like this from 'ssh' and care to comment? -> $ ssh 10.0.1.6 (root at 10.0.1.6) Password: client_global_hostkeys_private_confirm: server gave bad signature for RSA key 0: error in libcrypto I have virtually identical c8 Stream boxes and only one gives out this message. I regen keys but that changed nothing. many thanks, L.

Hi Dovecot-list! My setup consists of a dovecot server with lmtp delivery and 3 postfix mta servers in front. Previously the mtas authenticated (SASL) through the courier-authdaemond software to our mysql database. To get support for more password formats i migrated to dovecot for SASL authentification. Our postfix mtas connect to dovecot through a tcp-socket smtpd_sasl_auth_enable = yes

I have a huge dataset(15k X 18) and tried to use the heatmap in R to examine the patterns. However, I found that heatmap and heatmap.2 gave me completely different outputs. Here are the codes: ------------ > dim(as.matrix(data.dcpm)) [1] 15462??? 18 > > heatmap(as.matrix(data.dcpm), col=topo.colors(100)) > heatmap.2(as.matrix(data.dcpm), col=topo.colors(100), key=TRUE,

Hi I have a problem booting dom0 on Xen 3.1 under 2.6.18 kernel. At system start I obtain the next message: gave up waiting for root device. common problems: boot args (cat /proc/cmdline) check rootdelay= (did the system wait long enough?) check root= (did the system wait for the righ device?) missing modules (cat /proc/modules: ls /dev) /dev/sd* are not present in /dev dir and

Dear all Some computations gave a matrix. The single value decomposition of it worked fine previously, after an system upgrade I get the following error: ----- > La.svd(x,256,256) Error in La.svd(x, nu, nv) : BLAS/LAPACK routine 'DLASCL' gave error code -4 ----- Erroneous Matrix: ftp://usys-ftp.ethz.ch/ITES/STEP/nussbaum/R/matrix-lapack-error4.RData /.csv Operating System: Debian 8

Dear all, I am trying to use the integrate function in R but it seems that it does not work in my example and I cannot figure out why. I create a function Mu1 (which works fine) and try to integrate by the code: n <- 100 Ctrl <- as.matrix(cbind(runif(n, -30, 30))) W <- Ctrl + as.matrix(rnorm(n)) Rsp <- (W>as.matrix(sample(10, n, T)))*1 Mu1 <- function(x, Y=Rsp, Xc=Ctrl){ x

Hello, My first time on this list, just switched from courier imap/pop3 system to dovecot. Imap part is great, pop3 seems to suffer, been fighting it for a week. Anyway, the reason for this post is that I have seen these pop up in my logs, and on one of my mailheads there were some 50 lines of this dovecot: 2008-10-26 09:33:54 Error: auth(default): BUG: Authentication client gave a PID 15661 of

I've been getting these in my log for some time and was wondering what I had to do to get 'pam_winbind' to 'work' with my samba 'DC'? In looking around the net, others w/this error message were having a problem with blocking login's and password changes, completely. In my case, I have the 'pam_winbind.so' module in '/etc/pam.d/common-passwd' setup

Hello, I tried to post this as a bug on the trac site, but whenever I hit submit, I got the error message: --- Precondition Failed The precondition on the request for the URL /newticket evaluated to false. --- Anyway... Let''s say I have the following model classes: --- class Project < ActiveRecord::Base has_many :tasks end class Task < ActiveRecord::Base belongs_to