similar to: R: classification tree model!

a closer look to the help on predict.glm will reveal that the function accepts a 'type' argument. In you case 'type = response' will give you the results in probabilities (that it seems to be what you are looking for). There also is an example on use of the 'type' argument at the end of the page. Stefano -----Messaggio originale----- Da: r-help-bounces at r-project.org

Full_Name: Gregory R. Warnes Version: R 1.3.1 OS: Solaris 2.8 Submission from: (NULL) (192.77.198.200) rpart library version 3.1-2 Error message: > plotcp(fit.thirds.1,ylim=c(0.7,1.5)); Error in plot.default(ns, xerror, axes = FALSE, xlab = "cp", ylab = "X-val Relative Error", : formal argument "ylim" matched by multiple actual arguments > This can be

hi, I have a question regarding cp values in rpart(). When I use plotcp() I get a figure with cp values on the x-axsis, but then I use printcp() the cp values in that list are different from the values in the figure by plotcp(). Does someone know why? Silje [[alternative HTML version deleted]]

Hi All, I have some questions on using library rpart. Given my data below, the plotcp gives me increasing 'xerrors' across different cp's with huge xstd (plot attached). What causes the problem or it's not a problem at all? I am thinking 'xerror's should be decreasing when 'cp' gets smaller. Also what the 'xstd' really tells us? If the error bars for

Hello all, I'm trying to plot the effects of variables estimated by a regression model fit individually, and for categorical predictors, the independent variable shows up on the y-axis, with the dependent variable on the x-axis. Is there a way to prevent this reversal? Sample code with dummy data: # make dummy data set.seed(1) x1 <- runif(200) x2 <- sample(c(1,2),200, TRUE) x3 <-

I ran this code (several times) from the Quick-R web page ( http://www.statmethods.net/advstats/cart.html) but my cross-validation errors increase instead of decrease (same thing happens with an unrelated data set). Why does this happen? Am I doing something wrong? # Classification Tree with rpart library(rpart) # grow tree fit <- rpart(Kyphosis ~ Age + Number + Start,

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Hello All,  I have used logistic regression glm in R and I am evaluating two models both learned with glm but with different predictors. model1 <- glm (Y ~ x4+ x5+ x6+ x7, data = dat, family = binomial(link=logit))model2 <- glm (Y~ x1 + x2 +x3 , data = dat, family = binomial(link=logit))  and I would like to compare these two models based on the prediction that I get from each model: pred1 =

Hi, I am using the packages tree and rpart to build a classification tree to predict a 0/1 outcome. The package rpart has the advantage that the function plotcp gives a visual representation of the cross-validation results with a horizontal line indicating the 1 standard error rule, i.e. the recommendation to select the most parsimonious model (the smallest tree) whose error is not more than one

Hi R folks, I am using R version 2.2.1 for Unix. I am exploring the rpart function, in particular the rpart.control parameter. I have tried using different values for xval (0, 1, 10, 20) leaving other parameters constant but I receive the same tree after each run. Is the10 fold cross-validation default still running every time? I would expect the trees to change at least a little when I

Dear r-help-list: If I use the rpart method like cfit<-rpart(y~.,data=data,...), what kind of tree is stored in cfit? Is it right that this tree is not pruned at all, that it is the full tree? If so, it's up to me to choose a subtree by using the printcp method. In the technical report from Atkinson and Therneau "An Introduction to recursive partitioning using the rpart

Bonsoir Alex, en utilisant "event.get_key_code" avec les touches du pavé numérique(clavier azerty) j''obtient les résultats suivants: par exemple: 1 = 324 2 = 325 3 = 326 Est-ce que j''obtient les mêmes résultats avec les mêmes touches avec un clavier querty? merci. _______________________________________________ wxruby-users mailing list wxruby-users@rubyforge.org

I've run into another postscript/rpart problem unrelated to the issues I've mentioned in a previous query. I'm using 1.3.1 on a Win2K box. >plotcp(some.rpart.object) draws a very nice plot on the windows graphic device. If I save this as a postscript file, either by opening a postscript device before calling plotcp, or by saving the graphics window as a postscript file, the

Hi all, Another requirement we have is that traffic entering the DS domain be classified then subsequently assigned a (different?) DSCP based upon its classification. For illustrative purposes only let''s say (for traffic entering the DS domain on dev eth0): - WWW traffic would be marked BE - traffic destined for 10.10.10.10 would be marked AF11 - VoIP traffic from 20.20.20.20 would

Hello list, I am faced with a two-class classification problem with highly asymetric class sizes (class one: 99%, class two: 1%). I'd like to obtain a class probability model, also introducing available information on the class prior. Calling kernlab/ksvm with the line > ksvm_model1<-ksvm(as.matrix(slides), as.factor(Class), class.weights= c("0" =99, "1" =1),

Hi, I created an rpart object and pruned the tree using 1-SE rule. I used 10-fold cross validation while creating the tree. Then, I extracted the cross-validated predictions for my data points using xpred.rpart and obtained some statistics like precision, recall, overall error rate, etc. However, these values change each time I run xpred.rpart because of the random shuffling going on before

Hello everybody, I'm looking for a way to build an RBF classification network with R but I can't find any. I know there is the 'neural' package, but apparently the RBF networks I can build with that are for approximation tasks only. Is there any package I can use to build an RBF network for a classification task? I've also looked on CRAN but couldn't find any. Thank you for

I''m thinking it should be fairly simple to have a puppetmaster call out to an ENC script that queries the EC2 API to get tags for classification purposes, and would be surprised if someone hasn''t already written an ENC script to do this. I''m thinking this will help let nodes in autoscaling groups get classified, however that does still leave the issue of certs. Thanks,

Hello everybody! For my academic project work I intend to use only open-source software. My objective is to carry out classification of satellite digital images using Geostatistics. I found out GRASS is a good software for image processing. Also a good geostatistics software is R. It is also known that R can be used in combination with GRASS. But I am not able to confirm that satellite digital

Hi all, I want to conduct a cluster analysis with quantitative variables. More precisely, it concerns binary and non-ordered categorical variables. For such data, various similarity measures have been proposed, such as the Jaccard index or the simple matching index. So, is there a package such as mva or multiv in the case of quantitative variables? Could you indicate me reviews, papers or