similar to: Modify the plotting parameters for Vennerable obj.

Hi, I'm new to using R and would like to use Vennerable to process my data and make Venn diagrams. However I cannot seem to install the package. If I enter the command install.packages("Vennerable", repos="http://R-Forge.R-project.org") I get the following message: package ?Vennerable? is available as a source package but not as a binary Warning Message: package

Dear R-users I want to save a list with characters a point plot and a Venn diagram in a single pdf page. I am successful to do this when I use a character list and two point plots. However when I try to replace the first point plots with my Venn diagram (built with Vennerable package, compute.Venn() and plot.Venn()) the Venn plot will not position at the right place in the pdf. I guess there

I was wondering if you could lend me some advice in using the Vennerable package. I am having trouble creating the right sort of Venn function output. I have "TRUE" and "FALSE"/NA str(mutset) 'data.frame': 2310 obs. of 3 variables: $ TestResult.1 : chr NA NA NA NA ... $ TestResult.2 :chr NA NA NA NA... $ TestResult.3

Hi everyone, I just installed R 2.10 using the Windows binary. At some point in the past using the Windows binary installation, the default behavior of ?functionname changed from plain text to a nice html interface. Now with R 2.10, the default behavior has changed back to the plain text help. I assume this has some thing to do with these changes listed for R 2.10, but I don't quite

Hi, I'm new to the list so apologies if this has been asked before. I couldn't find any refs in google. I recently installed the Vennerable library from Rforge, this required an upgrade of R to 2.10.0 by the 'pylr' dependency. However, a very simple command fails: Vcomb <- Venn(SetNames= c("EOCT", "EOCM"), Weight=c(0, 11841, 24084, 24660)) plot(Vcomb)

Dear r-helpers, Here I would like to have your kind helps on generating Venn diagram. There are some packages within R on this task, like venneuler, VennDiagram, vennerable. But, vennerable can not be installed on my Mac book. It seems VennDiagram can not work on my data. And, venneuler may have generated a wrong Venn diagram to me. Do you have any experience/expertise on those Venn diagram?

Dear list, I made the following example of a proto object that contains some data and a spline interpolation. I don't understand why test$predict() fails with this error message: Error: evaluation nested too deeply: infinite recursion / options(expressions=)? Best regards, baptiste test <- proto(source = data.frame(x=1:10, y=rnorm(10)), raw = function(.){

I?m trying to build a simple formula interface to work with a function using ggplot2. The following scheme ?works? up until the plot(p) request, at which point there are complaints about xlim?s and a blank graphics window. Looking at str(p) I do see the limits are NULL, plus layer 1 claims to have an empty data frame (but df is reproduced correctly). I'm sure I'm missing something really

Hi All, Say I have a data set with the following structure: Lines <- "ID ref_rank R1 R2 R3 R4 R5 R6 A 6 3 NA NA 7 8 2 B 7 4 NA NA 9 5 10 C 3 7 NA NA 8 10 8 D 4 2 NA NA 4 8 1 E 2 5 NA NA 4 7 7 F 8 5 NA NA 7 10 9 G 5 9 NA NA 8 10 2 H 1 6 NA NA 7 10

Hi folks, Wish y'all a Happy New Year 2010! I need some help with the following: Say I have lots of data sets, on which I have to apply a certain function on the same set of columns in each of the data set. Let's take, for ex, the typical data set is: df1 <- as.data.frame(cbind(rnorm(10),rnorm(10))) names(df1)[1] <- "A" names(df1)[2] <- "B" There are many

Dear all I am working on unbalanced panel data and I can readily fit a "pooling" model using plm(), but not a "within" or "random" model. Reproducing the examples in vignette("plm") and in the AER package I encountered no such issues. ##unfortunately I cannot disclose the data, and it is too big anyway > dim(ibes.kld.exp.p[x.subs , ]) [1] 13189 34

Hi, I'm trying to get data from web page and modify it in R. I have a problem with encoding. I'm not able to get encoding right in htmlTreeParse command. See below > library(RCurl) > library(XML) > > site <- getURL("http://www.aarresaari.net/jobboard/jobs.html") > txt <- readLines(tc <- textConnection(site)); close(tc) > txt <- htmlTreeParse(txt,

Dear mailing list, I have a C function that gives me a wrong result when I run it under Windows 7. This is the code under Linux (RHEL5): > library(phenoTest) > data(epheno) > sign <- sample(featureNames(epheno))[1:20] > score <- getFc(epheno)[,1] > head(score) 1007_s_at 1053_at 117_at 121_at 1255_g_at 1294_at -1.183019 1.113544 1.186186 -1.034779 -1.044456

I was wondering if anyone could help me figure out how to make a Venn diagram in R where the circles are scaled to the size of each dataset. I have looked at the information for venn (in gplots) and vennDiagram (in limma) and I cannot seem to figure out what parameter to change. I have looked this up online and do not seem to be seeing anyone else who has posted this question or the answer to it

Hi all, I am trying to plot a venn diagram using vennDiagram in limma package, but I have no idea how to have it colorful such as the color one created by the following website: http://www.pangloss.com/seidel/Protocols/venn.cgi. Any one has any advice? Thanks, D.

Hi, I'm in this situation: I what to generate N random numbers(integer) that are different from each other. One suggestion: tabel <- rep(NULL, N) for (i in 1:N){ temp <- as.integer(runif(1,1,max)) if(temp in tabel) { repeat (?) (temp <- as.integer(runif(i,i,max))) until (?) ((temp in tabel) ==FALSE) } else{ tabel[i] <- temp} I can't use

Hey I have just installed Samba 3.2.7 on my Debian 4.0 with compile. But I'm trying to to join my Windows AD, and samba returns Using short domain name -- UNDERVISNING Joined 'MAIL' to realm 'UNDERVISNING.LOCAL' return code = 0 First I got return code = -1 I just assumed that this was bad, so I powered on, but now I get return code = 0 but I still can't get any user

Hello! Some days ago I posted a message about mandatory profiles, and got a very useful answer from John H Terpstra with reference to his Samba Guide. Suddenly logging on runs much faster.... However, I have still one more problem to solve. I have set up the win2000 client to delete the cached profile on exit. The "problem" is that the user profile remains on the server in

Hi Running slackware 9.1 with compiled kernel patched to 2.6.6 running ok. Having problems compiling zaphfc.c First thing was the can't find "irq_vectors.h", but "solved" by changing the #include "irq_vectors.h" to #include "mach-default/irq_vectors.h" in /usr/src/linux/include/asm/ directory. But I still have errors with "structure has no

Hi. I am trying to set up my Asterisk box to block anonymous calls. I am having some grief from telemarketer calls to my number and I would like to block it. I see from my CDR's that some of my callers also have "unknown" in their FROM field. I would like to let them through. Only block the FROM "anonymous" that the telemarketers use. Have anyone here done it and