similar to: How to write a customized hclust algorithm in R?

Hello all, I manually created an hclust object. Now I am looking to reorder the leafs so they won't intersect with each other, and would be happy for advises on how to do that. Here is an example code: #------------------------------------- a <- list() # initialize empty object # define merging pattern: # negative numbers are leaves, # positive are merged clusters (defined by row

Hello all, I'm now working with hclust objects and was hoping to perform some basic editing on them like: - Joining = the merging of two hclust objects (so they will share one root) - Splicing = So to cut/extract a branch out of an hclust object - that by itself will be an hclust object. I noticed I could extract one element of an hclust object by turning it into a dendrogram,

Hello dear R help group, I would like to download the tRNA data on: http://gtrnadb.ucsc.edu/download.html And then import it into R. Can anyone direct me as to how to do so? Thanks, Tal ---------------------------------------------- My contact information: Tal Galili E-mail: Tal.Galili@gmail.com Phone number: 972-52-7275845 FaceBook: Tal Galili My Blogs: http://www.talgalili.com (Web and

Hello all, I wish to compare two dendrograms (representing Hierarchical Clusterings). My problems are several: 1) how do I manually create a dendrogram object ? That is, how can I reconstruct it as an "hclust" object that creates such a dendrogram, when all I have is the dendrogram image (but don't have the underlaying distance matrix that produced it) ? I see that there is a

Hello dear R-devel, I am allowing myself to bump this issue again (half a year later) - I think that the www.r-project.org website could benefit from having a description meta-tag. Could anyone please let me know who to contact regarding this? With much respect, Tal On Sat, Apr 2, 2011 at 4:24 PM, Tal Galili <tal.galili@gmail.com> wrote: > Hello Peter, > > Here is what google

After reading more, I understand I didn't formulate my last question correctly, so please allow me to rephrase: What I am looking for is a way to save the R console session output. That is, a command that would combine the results of using: ?sink # And ?savehistory My motivation for this is that doing it will allow someone who is a blind user of R to be able to easily export his results to

Hello dear R-help group. I wish to plot a scatter plot using icons (or images) instead of points. Is it possible? and how so? Thanks, Tal ---------------------------------------------- My contact information: Tal Galili E-mail: Tal.Galili@gmail.com Phone number: 972-52-7275845 FaceBook: Tal Galili My Blogs: http://www.talgalili.com (Web and general, Hebrew) http://www.biostatistics.co.il

Hello all, I imported a txt file with Hebrew column names, and wish to use them for my plots. I found that the Hebrew text is jumbled (Example: .áéèçåï.òöîé.) How do I fix it so to be able to see the characters in a correct way ? Thanks, Tal ---------------------------------------------- My contact information: Tal Galili E-mail: Tal.Galili@gmail.com Phone number: 972-52-7275845

Hello dear R-help mailing list. I wish to be able to have htmlParse work well with Hebrew, but it keeps to scramble the Hebrew text in pages I feed into it. For example: # why can't I parse the Hebrew correctly? library(RCurl) library(XML) u = "http://humus101.com/?p=2737" a = getURL(u) a # Here - the hebrew is fine. a2 <- htmlParse(a) a2 # Here it is a mess... None of

Hello all, # I am trying to read the text in this URL: u <- http://google.com/complete/search?output=toolbar&q=%d7%a9%d7%9c%d7%95%d7%9d # By using this command: readLines(u) And no matter what variation I tried, I keep getting this output: [1] "<?xml version=\"1.0\"?><toplevel><CompleteSuggestion><suggestion

I am getting a 404 page for this: http://wiki.r-project.org/ I was not sure who to write this to - so I am writing it here. Best, Tal ----------------Contact Details:------------------------------------------------------- Contact me: Tal.Galili@gmail.com | 972-52-7275845 Read me: www.talgalili.com (Hebrew) | www.biostatistics.co.il (Hebrew) | www.r-statistics.com (English)

Hi all, I am getting different results from ccf and cor, Here is a simple example: set.seed(100) N <- 100 x1 <- sample(N) x2 <- x1 + rnorm(N,0,5) ccf(x1,x2)$acf[ccf(x1,x2)$lag == -1] cor(x1[-N], x2[-1]) Results: > ccf(x1,x2)$acf[ccf(x1,x2)$lag == -1] [1] -0.128027 > cor(x1[-N], x2[-1]) [1] -0.1301427 Thanks, Tal ----------------Contact

Hi all, I was trying to run the latest version of RCurl on windows 7 with R 2.12 and got a "missing libeay32.dll" error. I now downloaded such a file from here: http://code.google.com/p/aion-inside/source/browse/trunk/out/libeay32.dll?spec=svn10&r=10 And placed it in the system32 folder. Now I get the following error: "The procedure entry point EVP_md2 could not be located in

(I am reposting this question after a few months without a solution...) Hi all, I am trying to read a .txt file, with Hebrew column names, but without success. I uploaded an example file to: http://www.talgalili.com/files/aa.txt And tried the command: read.table("http://www.talgalili.com/files/aa.txt", header = T, sep = "\t") This returns me with: X.....ª X...ª......

Hello all, I would like some R function that can translate a string to a "URL encoding" (see here: http://www.w3schools.com/tags/ref_urlencode.asp) Is it implemented? (I wasn't able to find any reference to it) Thanks, Tal ----------------Contact Details:------------------------------------------------------- Contact me: Tal.Galili@gmail.com | 972-52-7275845 Read me:

I am not sure who to send this to - so I am writing this here. It seems that the "index.html" pages on CRAN are gone. For example: http://cran.r-project.org/web/packages/ggplot2/index.html Is gone. But the directory is accessible: http://cran.r-project.org/web/packages/ggplot2/ Who should this be forwarded to? Cheers, Tal ----------------Contact

Hi all, A friend just sent me this: http://www.mathworks.com/company/events/webinars/index.html?id=&language=en <http://www.mathworks.com/company/events/webinars/index.html?id=&language=en>And asked me if there is something of the like in the R community. Does anyone know of such a think ? Cheers, Tal ----------------Contact

Hello all, Recently I started playing with running R scripts on the Condor system in my institute. (For more on this, have a look at: Running Long R Jobs with Condor DAG by Xianhong Xie link: http://cran.r-project.org/doc/Rnews/Rnews_2005-2.pdf ) Might someone advice me about the following question: How should I handle the RNG (random number generation) in the running of parallel instances of R

Hello all, I wish to fit a loess smother to a plot of Y`X, but in predicting the 95% quantile. Something that will be a combination of what rq (package quantreg} does, with loess. Is there a function/method for doing this? Thanks, Tal ----------------Contact Details:------------------------------------------------------- Contact me: Tal.Galili@gmail.com | 972-52-7275845 Read me:

Hello dear R help group, I wish to create a flowchart of my R code (specifically for profiling the connection of different functions). Maybe something similar to this: http://www.fatesoft.com/s2f/ But for R, and that it will be free (open source would be best). After some searching, I found this package: http://cran.r-project.org/web/packages/diagram/ But couldn't find a way to this