similar to: Problem with library(SSPA)

Hi Everyone, I am getting the following error message Error: cannot allocate vector of size 2.6 Gb In addition: Warning messages: 1: In dim(res$res) = dim(bi) : Reached total allocation of 8122Mb: see help(memory.size) 2: In dim(res$res) = dim(bi) : Reached total allocation of 8122Mb: see help(memory.size) 3: In dim(res$res) = dim(bi) : Reached total allocation of 8122Mb: see

Neither biocLite nor the GUI menus can install packages on my system. Here is relevant output: > version _ platform i386-pc-mingw32 arch i386 os mingw32 system i386, mingw32 status major 2 minor 11.1 year 2010 month 05 day 31 svn rev 52157 language R version.string R version 2.11.1 (2010-05-31) > source("http://bioconductor.org/biocLite.R") BioC_mirror =

Hello, I am trying to install SJava but I haven't been able to complete it successfully. I have tried to install it from bioconductor using the followin code and got the following output: > source("http://www.bioconductor.org/biocLite.R") BioC_mirror = http://bioconductor.org Change using chooseBioCmirror(). > biocLite("SJava") Using R version 2.12.2, biocinstall

Hi, I am unable to install packages on my R 2.12.0 Windows 7 machine. Here are the relevant lines: sessionInfo() R version 2.12.0 (2010-10-15) Platform: x86_64-pc-mingw32/x64 (64-bit) locale: [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252 [4] LC_NUMERIC=C LC_TIME=English_United States.1252

Dear List, as I'm trying to install R and Rgraphwiz on a Fedora Linux, I have a problem with the environement variable "PKG_CONFIG_PATH". The library "libgvc" is not getting recognized / found, although a recent version libgvc is on the system and can be seen via /usr/lib64. I've tried to edit the paths described in /etc/ldpaths but without any success. Any hints how

Dear all,   I write this message because I have a problem in data importation. I hope that you help me. My data base is in an Excel spreasheet. I import this data base using the following code: library(RODBC) db <- "C:/Users/Axel/Desktop/estimation/data.xls" channel <- odbcConnectExcel(xls.file = db) data <- sqlFetch(channel = channel, sqtable = "Feuil1") data

Hi, On a fresh install of R on mac os x 10.6.4 (snow leopard) RSQLite did not install while running biocLite() $ R R version 2.11.1 (2010-05-31) Copyright (C) 2010 The R Foundation for Statistical Computing ISBN 3-900051-07-0 [...] Loading required package: utils BioC_mirror = http://www.bioconductor.org Change using chooseBioCmirror(). [Previously saved workspace restored] >

I run R 1.9.0 on windows 2000, and have the following libraries installed: affydata_1.3.1 affy_1.4.23 Biobase_1.4.10 DynDoc_1.3.14 gcrma_1.0.6 hgu133acdf_1.4.3 hgu95av2cdf_1.4.3 hgu95av2probe_1.0 matchprobes_1.0.7 moe430acdf_1.4.3 multcomp_0.4-6 mvtnorm_0.6-6 rae230acdf_1.4.3 reposTools_1.3.29 rgu34acdf_1.4.3 tkWidgets_1.5.1 widgetTools_1.2.7 1. The rma function (in affy library) always crashes.

I currently set the Bioconductor repository in my .Rprofile using this code (which needs editing for every version number change of Bioconductor): # Choose repositories repos <- structure(c(CRAN="http://streaming.stat.iastate.edu/CRAN", CRANextra="http://www.stats.ox.ac.uk/pub/RWin",

Hola, Estoy intentando cargar la librería "sqldf" y obtengo este error: > library(sqldf) Loading required package: gsubfn Error : .onLoad failed in loadNamespace() for ''gsubfn'', details: call: get(name, envir = asNamespace(pkg), inherits = FALSE) error: objeto ''addVigs2WinMenu'' no encontrado Error: package ‘gsubfn’ could not be loaded La

To whom it may concern. As I would like to analyse some array data I was keen on downloading the lumi package that depends obviously on hdrcde that is not available for r 2.12.1. I did not find instructions to solve or circumvent this problem. Installing hdrcde by hand did not work either. It was not detected by > (.packages(all.available=TRUE)) if installed in the R library. Thanks Hermann

HI, I would like to update my DESeq package version on R-2-14 using bioclite() and get this message, could somebody help please? > biocLite("DESeq") BioC_mirror: 'http://www.bioconductor.org' Using R version 2.14, BiocInstaller version 1.2.1. Installing package(s) 'DESeq' Installing package(s) into ?/nfs/team82/nac/R-modules? (as ?lib? is unspecified) trying URL

Hello, The vignette concept, which started in Bioconductor, seems to be catching on. They are supported by R CMD build/check and documented in the Writing R Extensions manual. I think vignettes are a fantastic way to introduce new users to a package. However, getting new users to realize that a vignette is available can be challenging. For some time now, we have had a function in Biobase that

Hi, I am new to bioconductor, trying to install KEGGSOAP package, but got warnings() when installing and error message when trying to load the package, can anyone suggest what went wrong? many thanks John > source("http://bioconductor.org/biocLite.R") Bioconductor version 2.11 (BiocInstaller 1.8.3), ?biocLite for help > biocLite("KEGGSOAP") BioC_mirror:

Hi All, I posted this on the bioconductor list and didn't get a response there, so I'm hoping someone here can help. I don't know a heck of a lot about R, so I apologize if this seems like a trivial issue. This error comes up when trying to install the bioconductor globaltest package. Any clues? Thanks! Rusty -----Original Message----- From: bioconductor-bounces at r-project.org

R-2.10.1.tar.gz was built a short while ago. This is a maintenance release and fixes a number of mostly minor issues. See the full list of changes below. You can get it from http://cran.r-project.org/src/base/R-2/R-2.10.1.tar.gz or wait for it to be mirrored at a CRAN site nearer to you. Binaries for various platforms will appear in due course. For the R Core Team Peter

R-2.10.1.tar.gz was built a short while ago. This is a maintenance release and fixes a number of mostly minor issues. See the full list of changes below. You can get it from http://cran.r-project.org/src/base/R-2/R-2.10.1.tar.gz or wait for it to be mirrored at a CRAN site nearer to you. Binaries for various platforms will appear in due course. For the R Core Team Peter

Hello, I'm trying to install KEGGSOAP with bioconductor but i'm facing this problem: /> biocLite("KEGGSOAP") BioC_mirror: http://bioconductor.org Using R version 2.15, BiocInstaller version 1.4.4. Installing package(s) 'KEGGSOAP' trying URL 'http://www.bioconductor.org/packages/2.10/bioc/src/contrib/KEGGSOAP_1.30.0.tar.gz' Content type

Hi again, I have been playing around with the order of loading packages, and as far as I can tell, there's nothing specific with affycoretools that's causing my Rgui to crash (i.e., shuts down and the Microsoft 'please send error report' box pops up). Instead, it has something to do with the order & type of packages that are loaded that add items to the menu bar by

Hello Peter, Thank you, and the R core team, for the new release. I see that in R 2.11.0 there is now support for rendering of raster (bitmap) images through rasterImage(). I am wondering - can this be used to create a texture/fill-pattern for hist()/barplot() ? (A request made several times throughout the years on the mailing list. For example: