Displaying 20 results from an estimated 2000 matches similar to: "installing a package in linux"
2012 Jan 21
3
semi-transparency not supported in devel R? "alpha" cannot be specified in qplot()
Hi dear all,
In my laptop(ubuntu 11.10 64bit), I maintained a released R (2.14) and a
developmental R, I can specify qplot(..., alpha = ) in R 2.14 , but when I
try to use transparency in developmental R, I got a warning message and the
plot is clearly not I want.
minimal example:
> qplot(data = mtcars, x = mpg, y = cyl, alpha = cyl)
Warning message:
In grid.Call.graphics(L_points, x$x, x$y,
2012 Jan 21
3
semi-transparency not supported in devel R? "alpha" cannot be specified in qplot()
Hi dear all,
In my laptop(ubuntu 11.10 64bit), I maintained a released R (2.14) and a
developmental R, I can specify qplot(..., alpha = ) in R 2.14 , but when I
try to use transparency in developmental R, I got a warning message and the
plot is clearly not I want.
minimal example:
> qplot(data = mtcars, x = mpg, y = cyl, alpha = cyl)
Warning message:
In grid.Call.graphics(L_points, x$x, x$y,
2010 Apr 08
1
how to manipulate object in specific environment?
Hi
I want to simplify my problem into a prototype, how to write a function to
get all the object in your current environment, e.g. .GlobalEnv, and print
their mode?
For example, if I have object a,b,c... in my environment,
a=1;b='test';c=matrix(0,3,3).....
I want to write a function myfun(), when I run myfun(), this retrieve all
the objects in my environment automatically and print
2011 Nov 22
1
Bezier curve in R?
Hi dear all,
I am wondering if there is a function existing in R that did the quadratic
bezier curve interpolation? I hope to generate a bezier curve based on
three sets of points: two end of the line and a control point.
Thanks in advance.
Tengfei
--
Tengfei Yin
MCDB PhD student
1620 Howe Hall, 2274,
Iowa State University
Ames, IA,50011-2274
[[alternative HTML version deleted]]
2010 Apr 29
2
by funtion
Hello,
I have a data.frame:
name col1 col2 col3 col4
AA 23 54 0.999 0.78
BB 123 5 1 0.99
AA 203 98 0.79 0.99
I want to get mean value data.frame in terms of name:
name col1 col2 col3 col4
AA 113.0000 76.0000 0.8945 0.8850
BB 123.00 5.00 1.00 0.99
I tried to use by function:
>aa<-by(test[,2:5], feature, mean)
2010 Apr 29
1
How to extract data table
I'm a very new user of R,
The problem I got is when I have lots of data table, 3 columns and 100 rows
assigned to a variable x.
how can I transform the table into a external file excel or other files
without losing any information. So that make the data look nicer.
--
View this message in context: http://r.789695.n4.nabble.com/How-to-extract-data-table-tp2075750p2075750.html
Sent from the R
2010 Apr 19
2
Select single column, preserve name?
Hi, list-
?? I've got a large list of multi-column data and I'd like to filter
it according to a threshold, such as, "show me the values that are
above 0.4 for each line."
For instance, if the line of data were:
> line
v1 v2 v3 v4 v5 v6 v7 v8 v9
1 -0.32 0.66 -0.35 -0.82 0.38 0.66 -0.02 -0.11 -0.64
I can do this
> line[,line >= 0.4]
2010 Apr 12
4
R GUI
I am really new with R Graphical user interfacefunctions. I am developing a
software package to calculate pKa (biochemistry) but I want to make it look
aesthetically pleasing and make it user friendly. I have heard that R has
some GUI (Graphical user interface) and you can do some really cool stuff
out there. What are the limitations and what are some resources for help. I
have found a couple of
2012 Apr 23
2
Overlay Gene Expression on SNP (copy number) data
Hello,
Can anyone please suggest any packages in R that can be used to overlay gene expression data on SNP (affymetrix) copy number ?
Thanks,
Ekta
Senior Research Associate
Bioinformatics Department
Jubilant Biosys Pvt Ltd,
#96, Industrial Suburb, 2nd Stage
Yeshwantpur, Bangalore 560 022
Ph No : +91-80-66628346
The information contained in this electronic message and in any attachments to this
2010 Jul 09
3
R crashes with large vectors
Good afternoon,
I have been experiencing a lot of crashes working with large vectors in R.
Specifically, I am using XTS of length of minimum 120k elements.
My problem is that I cannot display the vector (otherwise R crashes), I
cannot plot it either (otherwise R crashes). That could be solved by
reducing the amount of points.
However, I have been performing some statistical opreations on is
2010 Apr 27
2
R for ubuntu 10.04?
Hi dear all
I am currently using Ubuntu 9.10 (karmic) and R 2.10, I can find a R release
that support "karmic" in cran under ubuntu directory, I plan to update my
laptop to Ubuntu 10.04 after April 30, since I have to use some new features
or new version in it, e.g. QT 4.6, I don't know if there is going to be a R
release that will support this newly released Ubuntu?
Thanks in
2010 Apr 27
1
R for Ubuntu 10.04?
Hi dear all
I am currently using Ubuntu 9.10 (karmic) and R 2.10, I can find a R release
that support "karmic" in cran under ubuntu directory, I plan to update my
laptop to Ubuntu 10.04 after April 30, since I have to use some new features
or new version in it, e.g. QT 4.6, I don't know if there is going to be a R
release that will support this newly released Ubuntu?
Thanks
Best
2011 Jun 08
1
Reference Class error message: may be caused by lazy evaluation?
Dear All,
I came across an error message recently when constructing a reference class,
an example is attached below, it looks like only if I call a specific method
in advance, otherwise it cannot be found in defined method without using
.self, this make it difficulty that sometimes in my initialize method, I
need to call other method defined in the same reference class, the
workaround for this is
2012 Jan 15
1
ggExtra package installation fails
Hi dear all,
I cannot find ggExtra source code or install it by
install.packages("ggExtra", repos="http://R-Forge.R-project.org")
I am really interested in one of the functions inside called "align.plots",
but cannot find the package on-line.
Do I miss something? or is there any function similar to that I can easily
align multiple plots on the same x-axis on one
2011 Jan 30
2
problem reading file containing bit vector
Hi I have a tab delimited file with fillowing content:
"swissProtID" "entrezID" "bitVec"
"Q62924" "---" "00000000100010000000000000000000"
"P18897" "---" "00000000000001000100000000000000"
"Q62736" "---"
2010 Oct 17
0
make error for R 2.13.0
Hi dear all
It's the first time for me to install a developmental version of R, I came
across following errors, my system is
DISTRIB_ID=Ubuntu
DISTRIB_RELEASE=10.04
DISTRIB_CODENAME=lucid
DISTRIB_DESCRIPTION="Ubuntu 10.04.1 LTS"
I downloaded the dev version of R in cran R source, and downloaded the
recommended packages by using wget as described in R manual, and run
2010 Jun 16
1
Is there any function to read genbank flat files.
Hi
I am trying to read genbank est flat files. Is there any function in R to do
that. I was looking for something similar to SeqIO.parse(input_handle,
"genbank") in bioPython that convert the genebank sequence into fasta
sequence.
(One option is to call biopython from R but I am not familiar with python
functions so I want to avoid that and I am keeping it as last resort)
Thanks and
2011 Mar 09
2
collapse a data column into a row
I have a file with a data in columnar format like below:
probeID
rc_AI104113_at
rc_AI178259_f_at
rc_AI179134_i_at
rc_AI179134_f_at
rc_AI104113_at
rc_AA819429_f_at
How can I rewrite it in the format below:
'rc_AI104113_at', 'rc_AI178259_f_at', 'rc_AI179134_i_at',
'rc_AI179134_f_at', 'rc_AI104113_at', 'rc_AA819429_f_at'
Is there any function to do
2010 Jul 14
1
calling a c function from R
Hi,
I am trying to call a C function, that I wrote to parse a flat file, into
R. The argument that will go into this function is an input file that I need
to parse and write the desired output in an output file. I used some hit
and trial approach but i keep on getting the "file not found" or
"segmentation fault" error. I know that the error is in passing the argument
but I
2010 Oct 21
2
How to access values in s4 method
Hi
How to access the values in the output that is an object of S4 type. I tried
to access using subset ( [ ] ) but it is not allowed.
Any clue??
Thanks
-- Fahim
#My code is as follows:
require(IRanges);
query <- IRanges(c(1, 4, 9), c(5, 7, 10))
subject <- IRanges(c(2, 2, 10), c(2, 3, 12))
findOverlaps(query, subject)
Output of find overlap function is:
------------------
1>