similar to: sum column by colnames

R gurus: I'm trying to get another round of rconifers out and I need some advice/help crushing differences in the examples test. I'm trying to make sure the max sdi values are being respected. I've added a tests/rconifers-Ex.Rout.save (from windows i386-pc-mingw32) and when I ran R CMD check (both R-2.13.0), I got the following results: * using log directory

I have several rasters that I want to do some calculations ,basically calculating the moving average. dir2 <- list.files("D:\\2010+2011", "*.bin", full.names = TRUE) saf=stack(dir2) movi <- overlay(stack(saf),fun=function(x) movingFun(x, fun=mean, n=3, na.rm=TRUE)) Error in .overlayList(x, fun = fun, filename = filename,

This came up on r-help but indicates a bug. dnbinom(x,n,p) calls dbinom_raw(n-1,...) which returns 0 for n<1. -thomas ---------- Forwarded message ---------- Date: Thu, 08 Feb 2001 17:10:23 +0000 From: Yudi Pawitan <yudi@stat.ucc.ie> To: Mark Myatt <mark@myatt.demon.co.uk> Cc: R-Help <r-help@stat.math.ethz.ch> Subject: Re: [R] Goodness of fit to Poisson / NegBinomial

I am trying to multiply a 3D array of 4x4x4 by the 4 3D arrays of a 4D array with dimensions 4x4x4x4 (the last dimension being the one that I want to split by). (4x4x4 array) > hiaAry , , a1 i1 i2 i3 i4 h1 9.5936098 6.001040 0.08772 0.3138600 h2 1.2003500 1.454570 2.79248 0.0000000 h3 0.1346500 0.201220 0.39256 0.5464000 h4 0.0109000 0.012270 0.16417 0.2766900 ,

I compiled R 2.1.0 under Windows XP SP2 as a preliminary to rebuilding a custom package for use with R 2.1.0. The compile completed successfully, and I was able to run demo(graphics) successfully. But make check and make check-recommended fail. > version _ platform i386-pc-mingw32 arch i386 os mingw32 system i386, mingw32 status major 2 minor 1.0 year 2005

I have a set of time-series climate data with missing entries. I need to add rows for these missing entries to this data set. The only way I know to do this is unsing a foreloop, but this won't work on a list. I've tried to convert the list to a data frame, but that won't happen, either. I want to fill rows in this table: > newtest[10:15,] yrmos yearmo snow.sum snow.mean

Hi, I have run mars() with the default degree=1, and have constructed splines which are similar to what I would get from Salford System's MARS. I then use these splines as potential predictors, along with rpart( ) terminal nodes and other potential predictors, in logistic regression in SAS. The output of mars() and the splines I created are shown below (pardon the lengthy output): >

Hi!, I'm really hoping someone out there will be able to help me. I recently started my MSc dissertation on Population Projection Matrices, which has been going well until now. I am trying to set-up a general script that does a pairwise comparison of all elements in my matrices. So for example, given that I have the following matrix S: > S [,1] [,2] [,3] [1,]

Hi, With this data.frame: > class(rwl) [1] "data.frame" >rwl 0028002F 0028013F 0028032F 1833 3.39 NA NA 1834 3.09 NA NA 1835 3.05 NA NA 1836 3.31 NA NA 1837 2.26 NA NA > colnames(rwl) [1] "0028002F" "0028013F" "0028032F" Ok.... > colnames(rwl[,1]) NULL why??

My goal is simple: calcuate GC content of each sequence in a list of nucleotide sequences. I have figured out how to vectorize, but all my attempts at memoization failed. Can you show me how to properly memoize my function? There is a StackOverflow post on the subject of memoization, but it does not help me: http://stackoverflow.com/questions/7262485/options-for-caching-memoization-hashing-in-r

I need to perform a QR-decomposition of a sparse matrix, so I've been trying to use the Matrix package. Unfortunately I don't seem to be getting exactly the same results as if I had used the qr() command from the base package. Here is an example of what I'm doing. > spdata <-rpois(50,1) > y <- rnorm(10,0,1) > S <-

hi, - big and ugly mail. If you don't like them, delete it now :-) - I have collected and classified some information of: http://home.earthlink.net/~rwhron/kernel/bigbox.html And I observed that ext3 performance is worse than previous kernels(2.4.19...). -ac and -aa are here only as reference. Complete information is in the upper URL. dbench: Performance is worse. dbench (Numbers are in

I am also having problems receiving my first fax. I get a 320byte file (for a 4 page fax). If I look a the tiff generated, is just has some few dots. I am sending the fax from a notebook with Windows XP to an X100P and using libtiff v3.5.7. Has anyone successfully received faxes ? Output to the console as follows: Changed from phase 0 to 1 > Start receiving document > Changed from

HI, GUYS, I used the following codes to run SVM and get prediction on new data set hh. dim(all_h) [1] 2034 24 dim(hh) # it contains all the variables besides the variables in all_h data set. [1] 640 415 require(e1071) svm.tune<-tune(svm, as.factor(out) ~ ., data=all_h, ranges=list(gamma=2^(-5:5), cost=2^(-5:5)))# find the best parameters. bestg<-svm.tune$best.parameters[[1]]

Hi all, I have a function rho.f which gives a list of estimators. I have the following problems. rho.f(0.3) gives me the right answer. However, if I use rho.f(corr[4]) give me a different answer, even though corr[4]==0.3. This prevents me from using a for loop. Can someone give me some help? Thank you very much in advance. Hannah >

Here's one last plea for help from the list before I give up on the totally cool software FAX modem concept in complete despair (for now, at least, until I have more time to dig into it).... I am simply not able to successfully receive a FAX no matter what device I transmit from or how I bring the call into Asterisk. My lastest effort was a call from a Pitney-Bowes FAX machine into an X100P

Does anyone have any "R" code for computing the entropy of a simple first or second order Markov chain, given a transition matrix something like the following (or the symbol vector from which it is computed)? AGRe ARIe CSRe DIRe DSCe eos HRMe SPTe TOBe AGRe 0.0000000 0.0000000 0.0000000 0.0000000 1.0000000 0.0000000 0.0000000 0.0000000

Hello all! I have a problem with ggplot2 library. I want to do an heat map and the y variables are the year months. If I use the following code, he y values are in alphabetical order, but I want it in month order. The code is: library(reshape) library(ggplot2) library(scales) p <- ggplot(data.m, aes(variable, Month)) + geom_tile(aes(fill = value),

Hi, R-users, data is a matrix like this AMR BS GE HR MO UK SP500 1974 -0.3505 -0.1154 -0.4246 -0.2107 -0.0758 0.2331 -0.2647 1975 0.7083 0.2472 0.3719 0.2227 0.0213 0.3569 0.3720 1976 0.7329 0.3665 0.2550 0.5815 0.1276 0.0781 0.2384 1977 -0.2034 -0.4271 -0.0490 -0.0938 0.0712 -0.2721 -0.0718 1978 0.1663 -0.0452 -0.0573 0.2751 0.1372 -0.1346

#Here is a vector of IDs > cwaves [1] 86 90 185 196 197 209 210 215 216 217 218 #Here is a matrix. The rows and columns correspond to the IDs in cwaves, and the matrix is populated with a coefficient > mat 86 90 185 196 209 210 215 216 217 218 86 0 0 0 0 0 0.00000 0 0.000000 0.000000 0.000000 90 0 0 0 0 0 0.00000 0