similar to: installing RCurl when libcurl is in non-standard location

Hi, I am having trouble getting RMySQL running on a solaris machine. [43] bedrock:/home/jayoung/source_codes/R/other_packages> uname -a SunOS bedrock 5.10 Generic_118833-36 sun4v sparc SUNW,Sun-Fire-T200 I thought I had finally managed to get it installed, albeit with some warnings that I didn't understand (it took me a while to find where our mysql libraries were), but when I tried

Looks to have libgfortran installed. yum list installed | grep libgfortran libgfortran.x86_64 4.4.7-16.el6 @rhel-x86_64-server-6 What else could I check? Installed libcurl-devel and libidn-devel. yum list installed | grep libcurl libcurl.x86_64 7.19.7-46.el6 @rhel-x86_64-server-6 libcurl-devel.x86_64

Hi, for checking purposes, I setup a multiple sub-architecture R installation following this post from Simon Urbanek: https://stat.ethz.ch/pipermail/r-devel/2011-August/061755.html It all went fine. The only change I made to Simon's procedure was to install with: make prefix=~/bin/R/2.15 install instead of sudo make install rhome=/usr/local/R/2.15. I am now trying to install RCurl in

Hi, I've successfully updated our linux version of R to 2.9.0 but am having trouble on our solaris machine. I had previously installed 2.8.1 and earlier versions without trouble. I'm using R-patched_2009-05-20.tar.gz (I had also tried the 2009-05-10 version). Here's some info on our machine (I'm not the sysadmin): [2] bedrock:/home/jayoung> uname -a SunOS bedrock 5.10

Hi, I'm having trouble compiling R-2.10.0 (R-patched_2009-11-02.tar.gz) on solaris 10 and am hoping for some advice. I'm getting errors about having the wrong version of lib_I_dbg_gen.so.1 ("version `DBG_GEN_5.1' not found"), when it gets to the step of compiling recommended packages (cluster). I think we do have the right version of lib_I_dbg_gen.so.1 on the

Hi, I found an architecture-specific segfault problem with the XML package. I originally found the problem using the parseKGML2Graph function in the Bioconductor KEGGgraph package, but as far as I can tell the underlying issue seems to be with the xmlTreeParse which is called by parseKGML2Graph. I'm trying this piece of code, from the xmlTreeParse help page: library(XML) fileName <-

dear list, i'm trying to install the package RCurl into a linux system running SUSE Linux Enterprise Server 10 SP2 but i get compilation errors which i guess should be due to some missing additional software. i've been searching about the R-help archives without success so i hope somebody can point me out to this missing piece. in principle, i have the necessary curl software installed:

Hello all, I had both curl and curl-devel (both 7.15) installed on my x86_64/CentOS machine. However, I still got problem when I do R CMD INSTALL RCurl   Error message below, since library and/or include path is missing. I tried R CMD INSTALL RCurl --configure-args='--libdir=/usr/lib64/  --includedir=/usr/include/' Same result. Any hint/suggestion would be appreciated. ... No

Hi, I managed to make R core dump (linux and Mac OSX versions), but I think I've figured out why. First, here's the message I get on core dump (on linux - no message on Mac): R: ../inst/include/tnt/fmat.h:529: TNT::Vector<T> TNT::matmult(const TNT::Fortran_Matrix<T>&, const TNT::Vector<T>&) [with T = double]: Assertion `A.num_cols() == x.dim()'

Shahar: This is the same patch as you posted, but I have rebased it on top of current HEAD. You'll have to do save the next email to a file, and do: git reset --hard HEAD^ git pull git am /path/to/saved_email There are no changes in this patch, except what is needed to make it compile. Will follow-up with comments. Rich.

On Thu, Aug 21, 2014 at 01:50:18PM +0100, Richard W.M. Jones wrote: > + (* extract ova (tar) file *) > + let cmd = sprintf ("tar -xf %s -C %s") (ova) (dir) in Lots of extra parentheses here :-) The same command can be written more naturally without any of them: let cmd = sprintf "tar -xf %s -C %s" ova dir in However I think what you might have meant is to call

Hi there, I'm trying to get some text in the outer margins of my plots and am having trouble - the margin text is overlapping my plots, even though the outer margin I'm trying to put it in is very big. I've simplified my problem down to this: ------------------------- X11(width=7.5,height=10) par(mfrow=c(6,1),oma=c(20,0,20,0), mar=c(0,3.1,1,2.1)) for (i in 1:6) {

Martin, Well, thanks for jumping in! We need all the help we can get ;) I changed the execute bit as you suggested and recompiled, no luck, still the same error message. Below is the output you wanted me to look at, its a bit beyond me so I include both a brief grep summary and then the whole enchilada. I do note that my output is different from yours, but I'm not sure how to interpret. I

Martin, Well, thanks for jumping in! We need all the help we can get ;) I changed the execute bit as you suggested and recompiled, no luck, still the same error message. Below is the output you wanted me to look at, its a bit beyond me so I include both a brief grep summary and then the whole enchilada. I do note that my output is different from yours, but I'm not sure how to interpret. I

Hi, I'm very much enjoying using the ape package to produce phylogenetic trees with colored branches (using edge.color). Is it also possible to specify that some branches should be drawn as dotted lines? That would be really useful. I've tried messing around with edge.width, but that doesn't seem to help me get dotted lines. thanks, Janet Young