similar to: debugging package

If an Rd file has only one keyword entry then the Splus sgm file made with Rdconv --type=SSgm has no keyword entries. To reproduce: Use prompt() to make a skeleton help file R> f<-function(x)log(1+x)-log1p(x) R> prompt(f) Created file named 'f.Rd'. Edit the file and move it to the appropriate directory. R> q() It has 2 \keyword entries in it

I have a peculiar problem that I'm sure is a simple one, but I can't figure out what my mistake is. Can someone enlighten me? I have a simple file, class.R: ## setClass("abc",representation(a = "character", b = "ANY")) I have a package directory ExpressCGH1 made with package.skeleton. The package happily builds and installs, but R CMD check fails with

Dear R helpers, I've successfully created a package 'constants' using package.skeleton () with one dataframe and a few functions. However, now that I want to add some functions and data to the package, I run into a problem. I ran prompt(...) and moved + edited the resulting .Rd files as appropriate (I believe). The log file from RCMD check constants does indicate a few

Hi, I have written a package that contains many s4 generic functions and associated methods. I am having a lot of trouble getting R to build the help pages for these generic functions without reporting, "missing link(s): ~~fun~~, which means that it cannot find the appropriate function when code in the example section of the help is run. Right? After some playing around I can get it to

-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Hi all, I wanted to set up my first (private) R-package and wondered if there was a function to prompt() for multiple aliases in one Rd-file, e.g. to create something like the normal distribution manual page encompassing rnorm, dnorm,... As I didn't find it, I modified prompt.default() and wrote a small function to do this job, called

Hi it says in R-exts that A method must have all the arguments of the generic, including ... if the generic does. A method must have arguments in exactly the same order as the generic. A method should use the same defaults as the generic. So, how come the arguments for rep() are (x, times, ...) and the arguments for rep.default() are (x, times, length.out, each, ...) ?

I put out an email last night with output from my package check. Many thanks to Uwe and Liviu who got back to me quickly about how to fix some of the errors. I realize though, that I had some additional questions / confusion points in terms of documenting packages. 1) I seem to understand how to document a straightforward function, but am having trouble figuring out how to document methods

There are usually two directories involved in an install: the source directory and the install directory in R_HOME/library. The INSTALL procedure builds the package (usually in place in Windows, I'm not sure if that's the case in Unix) and installs it into the install directory by copying those files necessary to use it. REMOVE removes the install directory, cleaning up

Hi, sorry for this lengthy post. I am using R-2.0.0 on Unix, compiled. Overview: A) R CMD check: Unaccounted top-level text B) In which sections of *.Rd is LaTeX notation allowed, where *not*? C) Codoc mismatches and polyvalent parameters D) Successful R CMD INSTALL and R CMD build E) cp ../Rd.sty . is copy necessary? F) latex ./CWHstat-manual.tex runs into trouble When running >R CMD

Hi, sorry for this lengthy post. I am using R-2.0.0 on Unix, compiled. Overview: A) R CMD check: Unaccounted top-level text B) In which sections of *.Rd is LaTeX notation allowed, where *not*? C) Codoc mismatches and polyvalent parameters D) Successful R CMD INSTALL and R CMD build E) cp ../Rd.sty . is copy necessary? F) latex ./CWHstat-manual.tex runs into trouble When running >R CMD

I would like to propose adding a new plot function to the 'graphics' package. The new function is called areaplot() and I have implemented it as a generic function that supports a variety of data classes. An area plot consists of a simple line, like plot(x, y, type="l"), except the area between 0 and the line is a filled polygon. Areas can be stacked on top of each other,

Dear useRs, I am trying to build my package (nonpareff) which deals with some models of data envelopment analysis. The building worked well, but checking complains when it tests examples. Zipped nonparaeff.Rcheck is attached. Following is the log. --------------------------------------------- arecibo:tmp arecibo$ R CMD build nonparaeff/ * checking for file 'nonparaeff/DESCRIPTION' ...

Hi, This is a follow up to: https://stat.ethz.ch/pipermail/r-devel/2010-July/057921.html The Bioconductor daily builds have been reporting a lot of strange things lately on Windows using R-2.12. This started 2 or 3 months ago and things are not getting better with recent R-2.12. Here is a sample from today's build results. We use Windows Server 2003 R2 for the 32-bit builds, Windows

Dear R developers, When building/checking my package (in R 2.6.1 under windows) I run into some messages that I do not completely understand and that do not give me precise enough leads to pinpoint where the error in my package is. I would be very grateful for any suggestions. Did anyone else encounter the same problem before? When building or installing the package, I get the message (no error

Dear R-users I am trying to recompile a CRAN package on Windows 32. Rtools for 2.14 (that is the version I am running) and miktex were sucessfully installed on my machine. Problems: a) hydroGOF is a CRAN package, but R CMD check does not work on it. C:\Users\eduardo\Documents\R_tests2>R CMD check hydroGOF * using log directory 'C:/Users/eduardo/Documents/R_tests2/hydroGOF.Rcheck'

hello, everybody, I create a package by myself named "var" on Linux system. I attach a C code which uses "R_ext/Lapack.h" in directory "src". But when I carry out " R CMD check var", it shows > wxt0124() Error in .C("wxt1221", PACKAGE = "var") : C function name not in DLL for package var Execution halted Could you tell me what is

Hi, With recent versions of R-devel, "R CMD check" complains about some "Rd files with unknown sections". hpages at gladstone:~> R CMD check multtest_1.9.4.tar.gz ... ... * checking Rd files ... WARNING Rd files with unknown sections: /home/hpages/multtest.Rcheck/00_pkg_src/multtest/man/boot.resample.Rd: notes

Dear All, I am a beginner creating R packages. I followed the Leisch (2009) tutorial and the document ?Writing R Extensions? to write an example. I installed R 2.12.2 (I also tried R2.13.2), the last version of Rtools and the recommended packages in a PC with Windows 7 Home Premium. I can run R CMD INSTALL linmod in the command prompt and the R CMD check linmod. The following outputs are

I generally run 'make; make check' (with more settings) when building the Debian package. Running 3.2.4 rc from last night, I see a lot of package loading issues during 'make check'. Here is splines as one examples: checking package 'splines' * using log directory '/build/r-base-3.2.3.20160303/tests/splines.Rcheck' * using R version 3.2.4 RC (2016-03-02 r70270) *

What is so slow here? The render takes up 8% and the queries take up 1%. That leaves 91% unaccounted for. Completed in 0.06477 (15 reqs/sec) | Rendering: 0.00574 (8%) | DB: 0.00087 (1%) | 200 OK [http://localhost/] Any help would be appreciated. --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "Ruby on Rails: