similar to: read.affy.mixed - subscript out of bounds error

Hi everyone, I just installed R 2.10 using the Windows binary. At some point in the past using the Windows binary installation, the default behavior of ?functionname changed from plain text to a nice html interface. Now with R 2.10, the default behavior has changed back to the plain text help. I assume this has some thing to do with these changes listed for R 2.10, but I don't quite

An embedded and charset-unspecified text was scrubbed... Name: ?????? ?? ????????. URL: <https://stat.ethz.ch/pipermail/r-help/attachments/20080818/dcaa0623/attachment.pl>

Hi, I wanted to install Rgraphviz. From the R GUI, I downloaded the package but when I tried to load it I got the following error message: "This application has failed to start because libcdt-4.dll was not found. Re-installing the application may fix this problem." The R commands and errors are: > utils:::menuInstallPkgs() trying URL

Hi, I'm trying to get this library working under R2.10.0. I downloaded it and installed it from zip file. i get the following output. > library(hgu133a2.db) Error in library(hgu133a2.db) : there is no package called 'hgu133a2.db' > utils:::menuInstallLocal() package 'hgu133a2.db' successfully unpacked and MD5 sums checked > library(hgu133a2.db) Loading required

Dear R gurus, I have a function "goftests" that receives the following arguments: * a vector "x" of data values; * a distribution name "dist"; * the dots list ("...") containing a list a parameters to pass to CDF function; and calls several goodness-of-fit tests on the given data values against the given distribution. That is: ##### BEGIN CODE SNIP #####

Hi, I'm using a command in bioconductor that seems to require a package called hu6800cdf. I've installed this properly but I still get the same error: Could not find array definition file ' hu6800cdf.qcdef '. Simpleaffy does not know the QC parameters for this array type. See the package vignette for details about how to specify QC parameters manually. I've tried specifying

Dear R-help Hi, I'm Won. I try to do microarray normalization by R. I use justRMA function within affy package, got error about segment fault. I don't know why it happen. I attached error below. Please help me. Thank you. Cheers, Won ======================= OS : Redhat linux Cpu : intel xeon X5570 Memory : 26Gb & OS : Ubuntu Cpu : intel q6600 Memory : 8Gb

Hi all , I have one query. i have list of some .cel files. in my program i have to mention the path of these .cel files part of my program is, rna.data<-exprs(justRMA(filenames=file.names, celfile.path=*datadir*, sampleNames=sample.names, phenoData=pheno.data, cdfname=cleancdfname(hg18_Affymetrix U133A))) in the place of "datadir" i have to mention the character string of the

Dear all, I am meeting some problems with memory allocation. I know it is an old issue, I'm sorry. I looked for a solution in the FAQs and manuals, mails, but without finding the working answer. I really hope you can help me. For instance, if I try to read micorarray data I get: > mab=ReadAffy(cdfname="hgu133plus2cdf") Error: cannot allocate vector of size 858.0 Mb > I

I'm working on Human Exon Array 1.0 ST. I'm getting normalized data fine but I'm running into problems with QC. QCReport gives me the following error: > load(file= "huex10stv2cdf.rda") > exon.data at cdfName <- "huex10stv2cdf" > QCReport(exon.data, file = "QCReport.pdf") Error in as.vector(ans[[i]][, i.probes]) : subscript out of

Hi there, I got a problem when trying to read in a .cel file using ReadAffy(). R codes: require(affy) ReadAffy(filenames="CH1.CEL") It failed and I got the error, Error in read.celfile.header(as.character(filenames[[1]])) : Is CH1.CEL really a CEL file? tried reading as text, gzipped text, binary, gzipped binary, command console and gzipped command console formats Also, I tried

Hi all, I'm just tried to start analysing some micro-array chips. And R was asking for this package. When I tried to install it it says that: Using R version 2.10.1, biocinstall version 2.5.10. Installing Bioconductor version 2.5 packages: [1] "hugene10stv1cdf" Please wait... Warning message: In getDependencies(pkgs, dependencies, available, lib) : package ?hugene10stv1cdf? is