similar to: selective subsetting of a correlation matrix

Hi, I am looking for a R package which is capable to process and analysis pictures of tissues (stained) in an automatic way. I had a look on biops and EBImage (Bioconductor) but they are not automatic... Did you already use/know a such package ? Thanks, - Martial _________________________________________________________________ Tchattez en direct en en vidéo avec vos amis !

Dear R-users, I'd like to perform arithmetic functions on 1000 files containing a 2000x2000 matrix. Can anyone advise? For example, File1 File2 Output 1 1 1 4 4 4 5 5 5 2 2 2 + 5 5 5 = 7 7 7 3 3 3 6 6 6 9 9 9 Muhammad -- Muhammad Rahiz | Doctoral Student in Regional Climate Modeling Climate Research

Hello, I've written a brush for R for the SyntaxHighlighter JavaScript library. It allows you to display R code on a web page with the proper syntax highlighting. It's available here: http://demitri.com/code Comments and suggestions for improvement are welcome! Cheers, Demitri

Hello, I'm trying to get S4 dispatch on S3 "connection" objects. So I do : setOldClass( "connection" ) and then : setGeneric( "bling", function(object) standardGeneric( "bling" ) ) setMethod( "bling", "connection", function(object) cat( "gotcha ", as.integer(object), "\n" ) ) but I get : f <- file(

Hello, I very much enjoy "with" and "subset" semantics for data frames and was wondering if we could have something similar with split, basically by evaluating the second argument "with" the data frame : split.data.frame function(x, f, drop = FALSE, ...){ call <- match.call( ) fcall <- call( "with", data = call[["x"]],

Hello, I wrote a package, which in the NAMESPACE file exports functions like this: exportPattern("^\\rh") On R-2.8 (Linux, 64), upon loading the package I have the rh functions present. On R-2.10, Mac OS X, (32 bit), it builds, loads, but the functions are not loaded, i.e the only function is rhyper (which is not from my package). Is there something wrong with my package setup?

Hi everybody, I would like to ask if it is possible using pdf function or some other to print plots in cycle such that every new plot is on new page. like this pdf(file="D:/Plot.pdf",width = 9.25,height=9.25, family="Helvetica",pointsize=8,bg="white") for (i in 1:10){ x <- seq(1,40,1) y <- 2*x+1+5*rnorm(length(x)) hist(y,freq = FALSE) plot(density(y)) }

Full_Name: Joe Song Version: 2.10.0 OS: Windows 7 Submission from: (NULL) (97.123.159.234) Symptom: The following command in R > system("program > run.log") would not redirect standard output to the file "run.log". This bug did not exist on Windows XP, but appeared on Windows 7 when the same program is run.

Dear R helpers,   I am working on the scenario analysis pertaining to various interest rates. In this connection I need to form the various combinations as under :   Suppose I have two sets A = (a, b, c) and B = (x,y,z)   Then I can easily form the cominations as (ax, ay, az, bx, by, bz, cx, cy, cz)   However, if I have say 5 variables, then total no of possible combinations will be 3^5 = 243.

Hi, I am Linux Ubuntu 9.04 user. I'm using R-2.6. Actually, I am developing R package for reading/writing 3D images. I needed to use the R package Rcpp in order to make profit of available C/C++ codes. My problem is that my C code is not able to include the Rcpp.h In fact, when I run this command R CMD build rply, I got the following error message in the file

Hello, I have the following problem when trying to use rm: In a top level script file I have a loop iterating over some index. The loop is not contained within a function, so the scope of variables declared in the loop is global. Within this loop I generate several variables which should be removed at the end of each iteration. To do this, I wrote a function to clean up the workspace. An example

Hi! All, I have 2 correlation matrices of 4000x4000 both with same row names and column names say cor1 and cor2. I have extracted some information from 1st matrix cor1 which is something like this: rowname colname cor1_value a b 0.8 b a 0.8 c f 0.62 d k 0.59 - - -- -

Hi, I?m trying to install new package in R (version 2.4.0) under windows vista and i have problems. I always receive the same message: Erro en zip.unpack(pkg, tmpDir) : no fue posible abrir el archivo 'C:/Program Files/R/R-2.4.0/library/file2019500d/mprobit/libs/mprobit.dll' It can?t open the file. I check the compatibility with the version and is ok, I have no idea where's the problem

Dear all, i am new in R. I am writing a review paper about batteries. However, i am interested in analyzing all the papers by keywords, author, references and year. This could be done by "refviz" a software, which is only running on windows machines and which is not free. So my question to you is, is it somehow possible to write a script that can do all of this work? And if yes, with

library(some_library_name) Suppose I load a library. I'm wondering what command I should use to list all the functions, classes and variables defined in the library.

Hi All, I am trying to install the package rjags into a local library on a machine for which I do not have root permissions. Using the command: R CMD INSTALL --configure-args="--with-jags-include= ${JAGSBIN}/include/JAGS --with-jags-lib=${JAGSBIN}/lib/ --with-jags- modules=${JAGSBIN}/lib/JAGS/modules" CMD INSTALL -l ${JAGSBIN}/lib/ ../ rjags_1.0.3-12.tar.gz Where ${JAGSBIN} is

Hi All, I have got matrix 'data' of dimension 22000x600. I want to make 50 independent samples of dimension 22000x300 from the original matrix 'data'. And then want to calculate pearsons CC for each of the obtained 50 matrices. It seems it is possible to do this using 'boot' function from library boot but I am not able to figure out how? I am really stuck. Please help!

Colleagues, I am using R (2.9.2, all platforms) to search for a complicated text string using regular expressions. I would appreciate any help you can provide. The string consists of the following elements: SOMEWORDWITHNOSPACES any number of spaces and/or tabs ( any number of spaces and/or tabs integer any number of spaces and/or tabs ) Examples include: WORD ( 123 ) WORD(1 )

My question if in the Subject, but if to extend: I am specifically curious about WordPress blogs. But any solution will give me a lead. Thanks, Tal ---------------------------------------------- Contact me: Tal.Galili@gmail.com | 972-52-7275845 Read me: www.talgalili.com (Hebrew) | www.biostatistics.co.il (Hebrew) | www.r-statistics.com/ (English) [[alternative HTML version deleted]]

Hi, When using lapply (or sapply) to loop over a list, can I somehow access the index of the list from inside the function? A trivial example: df1 <- split( x=rnorm(n=100, sd=seq(from=1, to=10, each=10)), f=letters[seq(from=1, to=10, each=10)] ) str(df1) #List of 10 # $ a: num [1:10] -0.801 0.418 1.451 -0.554 -0.578 ... # $ b: num [1:10] -2.464 0.279 4.099 -2.483 1.921 ... # $ c: num