similar to: R won't recognize the order

Random r = new Random(); DirectedGraph<SimpleNode> graph = GetGraph(); decimal B = 0.1m; decimal D = 0.05m; int nodes = graph.NodesCount; decimal[] E = new decimal[nodes]; decimal[] P = new decimal[nodes]; for (int i = 7; i <= 10; ++i) P[i] =

Dear R help Don't really understand if there is graph or should be graph. > library(ggm) Loading required package: graph Error: package ?graph? could not be loaded In addition: Warning messages: 1: package ?ggm? was built under R version 2.15.3 2: In library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc) : there is no package called ?graph? G

Forgive me if I'm posting to the wrong place....It's my first time posting. Here's the situation: I'm using the sem package and making path diagrams using path.diagrams. Suppose I have the following code: #install.packages("ggm") require(ggm) cor = rcorr(7) nm = c("SOF", "IWF", "PWF", "FSC", "FSF", "EF",

Dear all, I'm writing my manuscript to publish after analysis my final data with ANOVA, ANCOVA, MANCOVA. In a section of my result, I did correlation of my data (2 categirical factors with 2 levels: Quantity & Quality; 2 dependent var: Irid.area & Casa.PC1, and 1 co-var: SL). But as some traits (here Irid.area) are significantly influenced by the covariate (standard length, SL), I

On 9 Apr 2002, George Michaelson <ggm@apnic.net> wrote: Please read this first: http://www.eyrie.org/~eagle/faqs/questions.html > I am using rsync to pull maildrop boxes to a laptop. > > when I do this, I really do want to zero/delete the file > afterward. > > I use rsync because its a lowest common denominator, and its fast > and reliable. > > But, I have

I'm trying to write code to calculate partial correlations (along with p-values). I'm new to R, and I don't know how to do this. I have searched and come across different functions, but I haven't been able to get any of them to work (for example, pcor and pcor.test from the ggm package). In the following example, I am trying to compute the correlation between x and y, while

Hello,I am trying to install a newer version of R (R 2.14.2) from this linkhttp://cran.r-project.org/bin/macosx/ However I am getting an error that it can not be installed on my computer. My Mac is version 10.6.8. Can you please advise me what the problem. I need the newer version to install the ggm package. Thanks, Heba [[alternative HTML version deleted]]

The Wine development release 5.5 is now available. What's new in this release (see below for details): - Builtin libraries use the new UCRTBase C runtime. - Compatibility mode used when reporting Windows version. - Better support for debug information in PE files. - Support for linguistic case mappings. - More attributes supported in WebServices. - Various bug fixes. The source

I'm new to R and trying to use the ggm package and I get the following message: > library("ggm", lib.loc="/Library/Frameworks/R.framework/Versions/3.0/Resources/library") Loading required package: graph Error: package ‘graph’ could not be loaded In addition: Warning message: In library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc) : there is no

I am a new user of the function sem in package sem and lavaan for structural equation modeling 1. I don?t know what is the difference between this function and CFA function, I know that cfa for confirmatory analysis but I don?t know what is the difference between confirmatory analysis and structural equation modeling in the package lavaan. 2. I have data that I want to analyse but I have some

---------- Forwarded message ---------- From: Sean Linton <sean at lpnz.org> Date: 20 November 2010 18:33 Subject: Festival of Pacific Arts web cast To: Robert Loomans <robertl at apnic.net>, George Michaelson <ggm at apnic.net>, sylvia at apnic.net, Gaurab Raj Upadhaya <gaurab at lahai.com>, Ian Pringle < ipringle at col.org>, Martin Hadlow <m.hadlow at

Hi, I am new to bioconductor, trying to install KEGGSOAP package, but got warnings() when installing and error message when trying to load the package, can anyone suggest what went wrong? many thanks John > source("http://bioconductor.org/biocLite.R") Bioconductor version 2.11 (BiocInstaller 1.8.3), ?biocLite for help > biocLite("KEGGSOAP") BioC_mirror:

Dear folks (or Dear Professor Bates), I'm quite confused as to the current status of some of the available functions applicable to lmer objects. Following the examples in Baayen, Davidson, Bates (2006), my plan is to run mcmcsamp on a random effect model created by lmer in package lme4, then use the (perhaps outdated) pvals to estimate p-value. But then I couldn't find pvals anywhere.

Hello. My name is Akashah. i work at metabolic laboratory. From my study, i found that volcano plot can help a lot in my section.  i already studied about the volcano plot and get the coding to run in R software, unfortunately, there is may be something wrong with the coding. This is because  no graph appear, but no error (blue color text) was shown on the R console. Below is the coding for

Dear R list, I have a recurring problem with the languageR package, specifically the aovlmer.fnc function. When I try to run the following code (from R. H. Baayen's textbook): # Example 1: library(languageR) latinsquare.lmer <- lmer(RT ~ SOA + (1 | Word) + (1 | Subject), data = latinsquare) x <- pvals.fnc(latinsquare.lmer,

HELLO, anybody... could you help me to check the below coding for volcano. what is the mistake? what the plot could not display? # volcano_plot.r # # Author: Amsha Nahid, Jairus Bowne, Gerard Murray # Purpose: Produces a volcano plot # # Input: Data matrix as specified in Data-matrix-format.pdf # Output: Plots log2(fold change) vs log10(t-test P-value) # #

Hi All Please see the Rprofile file which i have modified as follows and after that when I start R then I see that R says to me "TRUE" for all the packages implying that all loaded at once. But when i try to use commands as simple as help("lm"), it doesnt work nor any of the menu "Packages" is not working. Although the regression using lm ( Y ~ X ) is working

Hello, I am using fdrtool(x, statistic="pvalue") where x is a vector of chisq p-values. I can get this command to work with some x, but not with others. When it does NOT work, I get the following screen output: > fdrtool(pvals$Chi2.pval, statistic="pvalue") Step 1... determine cutoff point Step 2... estimate parameters of null distribution and eta0 Step 3... compute p-values

Hi everybody! I was using the function pvals.fnc from package 'languageR' until April. I do not know which version. Yesterday I updated all my packages and tried to run my loop again. Now I get the following error message: error in pvals.fnc(mm, nsim = 1000) : MCMC sampling is not yet implemented in lme4_0.999375-27 for models with random correlation parameters I guess it?s because of

Dear R-help: I've been trying to run pvals.fnc in the newest version of R (2.13.0). The function lmer worked fine, but when I tried to use pvals.fnc on the lmer object, I got the following error: "Error in pvals.fnc(elogr.subj.dys.sum.3x3.p, nsim = 10000) : trying to get slot "coefs" from an object (class "summaryDefault") that is not an S4 object." How can I