similar to: Problems trying to run R2jags on a Linux Cluster

Dear R users, I would like to fit cross classified or multiple membership logistic models or a 3 level hierarchical logistic model using the Umacs package. Can anyone advise me on how to proceed or better point me to examples of how its done. Regards, -- Luwis Diya, Leuven Biostatistics and Statistical Bioinformatics Centre (L-BioStat), Kapucijnenvoer 35 blok d - bus 7001, 3000 Leuven,

Dear R users I have been encountering an error (in the Winbugs window: Blackbox - index out of range ..... ). So to me it seems R2WinBUGS is not linking up well with the new R version since the same model runs well under r-2.9.2. So is my assumption correct or am I doing something wrong. The data I used and the code are in the help of R2WinBUGS (?bugs). Regards, -- Luwis Diya, Leuven

Dear R Users, I have a question, how does one print an r function like t.test in R (to get the whole function and not just a summary of the environment)? For example if I type the following: > t.test function (x, ...) UseMethod("t.test") <environment: namespace:stats> > print(t.test) function (x, ...) UseMethod("t.test") <environment: namespace:stats> I

Dear R users, I was wondering if anyone knows how to obtain(subset) the first and/or the last record of a subject in a longitudinal setup. Normally in SAS one uses first.variable1 and last.variable1. So my question is that is there an R way of doing this. Regards, -- Luwis Diya, Phd student (Biostatistics), Biostatistical Center, School Of Public Health, Catholic University of Leuven, U.Z. St

I have been trying to write my own user defined function in Rpart.I imitated the anova splitting rule which is given as an example.In the work I am doing ,I am calculating the concentration index(ci) ,which is in between -1 and +1.So my deviance is given by abs(ci)*(1-abs(ci)).Now when I run rpart incorporating this user defined function i get the following error message: Error in

Dear all, I recently started having some problemd with the coda package. I have also deleted it and then installed the package again. The problem is that I cant access the codamenu. That is ; ********************************************************************************************************************************************* > library(coda) > codamenu() Error in

Anyone used jags.parallel in latest version of R2jags? Ubuntu Oneiric, just ran updates in R to get latest R2jags package which supposedly has added jags.parallel command to send chains to multiple cores ... but when I submit, I get: test <- jags.parallel(d, inits, param, model.file="rats.bug", n.chains=3, n.iter=2000) Error: could not find function

Hi, I'm trying to generate a GLMM for Y following a negative binomial distribution. The first step I'm taking as a beginner in the use of R2Jags is to generate a GLM for Y following a Poisson distribution (I heard it's good in order to get used to the coding language), so here I am and here I face the first error message for which I can't find any mistake of spelling. Could you

Dear R users I am trying to load the package lmer4 but it seems the Matrix library is failing to load and giving me the following error message : >library(Matrix) Error in importIntoEnv(impenv, impnames, ns, impvars) : object 'Logic' is not exported by 'namespace:methods' Error: package/namespace load failed for 'Matrix' I have even reinstalled the Matrix

Hi, I'm trying to install rjags and R2jags with R version 2.14.1 (2011-12-22) on Linux Mint 12 machine using software repository: deb http://cran.fhcrc.org/bin/linux/ubuntu oneiric/ jags seems to install OK, but rjags gives a weird error about not finding fprec symbol. Here is a history of the problem including several attempts to work around it. (Because of Ben Bolker's recent

There is a thread on this topic already: http://finzi.psych.upenn.edu/Rhelp10/2010-August/250934.html I'm rather mystified by a similar problem and wondering whether I've overlooked something obvious. I'm running with latest versions of R and all packages, and latest version of JAGS running under Windows 7. Here's the problem. I have some source code. It's given below -

Hi All, I have a user who is receiving this error after running the following: library(rjags) library(R2jags) x = c(1.6907, 1.7242, 1.7552, 1.7842, 1.8113, 1.8369, 1.8610, 1.8839) n = c(59, 60, 62, 56, 63, 59, 62, 60) r = c(6, 13, 18, 28, 52, 53, 61, 60) N = 8 data=list("x","n","r","N") inits=function(){ list(alpha.star=0,beta=0) }

Try this: fn <- "tmp.dat" x <- 1:3 dump("x",file=fn) file.info(fn) ## 9 bytes file.copy(paste("./",fn,sep=""),fn,overwrite=TRUE) file.info(fn) ## 0 bytes (!!) Normally file.copy() checks and disallows overwriting a file with itself, but it only checks whether character string 'from' is the same as character string 'to'

So, I'm submitting R 3.0.1 jobs on Ubuntu (13.04) using 'R CMD BATCH --no-save filename.R &' (have an alias set to subr='R CMD BATCH --no-save") and am having a problem of sometimes the process ending without the R commands contained in the batch file actually having finished running. We're running Bayesian models using R2jags jags.parallel and it ends during the

On Wed, 2005-02-02 at 14:46, Geoff Shang wrote: > Ron Blok wrote: > > > <mount> > > <mount-name>/stream1</mount-name> > > <max-listeners>100</max-listeners> > > <fallback-mount>/test</fallback-mount> > > <fallback-override>1</fallback-override> > > > >

Ron Blok wrote: > Could it be a file/directory permission issue ? I have a vague recollection that the file needs to be able to be opened for writing as well as reading, if that helps. Geoff.

Frank (or anyone else), can you offer any comments comparing runjags, R2jags, rjags ? I couldn't find any vignettes, nothing except a brief mention on Task Views. Kevin On Wed, Oct 7, 2009 at 7:48 AM, Frank E Harrell Jr <f.harrell@vanderbilt.edu > wrote: > Have you tried the rjags package which uses the jags system? It is much > more integrated into R and works quite well.

On Mon, 07 Feb 2005 23:01:45 +0100, Ron Blok <ronblok@wxs.nl> wrote: > Hi Icecast users, > > I'm implementing a stream with authentication. > The basic's are working :-) like a dream! > No I am at the point where I need to enter the user information (username > and password). > Since I have approx 200 users it would by nice if I could add this users in > one

Ron Blok wrote: > Hi fellow icecast users, > > I get more an d more complaints from listeners who are trying to listen to > our stream behind a firewall. > It seams that more and more companies block port 8000 in their firewalls. > > Is there a solution for these cases ? I have somewhere read something about > streaming on port 80 instead of 8000. > Is this the

Hi Bharat/Philip, I haven't tested it yet. My systems are running RHAS 2.1. I'll come back to let you now the outcome. Regards, Robert. -----Original Message----- From: Bharat_Sajnani@Dell.com To: robert.blok@logicacmg.com Sent: 3/10/2004 7:09 PM Subject: RE: [Ocfs-users] copy error + control file corruption in ocfs 1.10 Hi Robert, Have you had a chance to retest this issue with the