similar to: Roxygen vs Sweave for S4 documentation

L.S. Since some time there is a new r-project.org site as announced here: https://stat.ethz.ch/pipermail/r-announce/2015/000581.html The logo has changed on the site, but I fail to find a vector graphics file. For the previous logo I used to go to https://svn.r-project.org/R-dev-web/trunk/Logo/ Is there anything similar for the new logo? Many thanks in advance. Kind regards, Tobias --

L.S. In this bug report https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14493#c1 it is mentioned that after moving an R installation one should regenerate the Rscript executable. Is there an easy way to do so (after an R installation has been moved)? I have not found any information in the R installation and administration manual. Many thanks in advance for any pointer. Best wishes,

Hi is there a list of all roxygen tags which are available? I couldn't find them. I am asking specifically towards the use of roxygen in documenting S4 classes - is that implemented yet (i am using roxygen 0.1 from CRAN at the moment)? Thanks Rainer -- Rainer M. Krug, Centre of Excellence for Invasion Biology, Stellenbosch University, South Africa

I have Vista Home with R-2.9.0, and installed and tried to test the package 'roxygen': > utils:::menuInstallPkgs() trying URL 'http://lib.stat.cmu.edu/R/CRAN/bin/windows/contrib/2.9/roxygen_0.1.zip' Content type 'application/zip' length 699474 bytes (683 Kb) opened URL downloaded 683 Kb package 'roxygen' successfully unpacked and MD5 sums checked The

Dear list, somehow I can't get the Roxygen tag "@example" to work for me. My "Roxygen-Header" of a script containing, say, a function looks like this: #' My header #' #' My description #' #' @param a Blabla. #' @param b Blabla. #' @return \code{TRUE}. #' @callGraphPrimitives #' @references #'

Hello useRs, I'm trying to use the Roxygen package. Here my code file : #' A packge to check Roxygen's sanity #' @name helloRoxygen-package #' @docType package NA And my R code to generate the package : library(roxygen) package.skeleton("helloRoxygen", code_files = "roxy.r", force = T) roxygenize("helloRoxygen", "helloRoxygen",

Any way to tell Roxygen to ignore a block of code? It is generating an unwanted .Rd file. I've been searching for hours for an example, scouring documentation, but no luck... Thanks. - Ken -- View this message in context: http://www.nabble.com/Roxygen-to-ignore-a-block-of-code--tp24133293p24133293.html Sent from the R help mailing list archive at Nabble.com.

Duncan Murdoch <murdoch.duncan <at> gmail.com> writes: > > On 04/10/2015 10:10 AM, Jonathan Greenberg wrote: > > Folks: > > [snip snip snip] > > > > Is there a way to do a conditional importFrom based on the OS? Or can I > > safely ignore this (I'm trying to submit to CRAN). > > > > Yes, you can put conditionals into the

Hi all, Since roxygen is a great help to document R packages, I am wondering if there exists an approach to go back from the raw Rd files to roxygen-documentation? E.g. turn "\author{Somebody}" into "@author Somebody". This sounds ridiculous, but I believe it helps in the long term for me to maintain R packages. Thanks! Regards, Yihui -- Yihui Xie <xieyihui at

Hi all, Sorry if this doesn't end up in the thread. Tobias Verbeke forwarded that e-mail to me, because he thought I would be interested in maintaining the Programming Tools CTV. I wasn't subscribed to R-devel yet, but I would indeed like to volunteer to maintain the Programming Tools CTV. It will be my first time creating a CTV, so some guidance on getting it setup will be appreciated.

Dear list, I have just started to use roxygen and cannot find out how to specify NOT RUN examples. I know that to include R code examples works via the @examples tag followed by the code. Without roxygen, if I want R code not to be run when processing the .Rd files I would include the \dontrun tag \examples{\dontrun{ ... some example R code} } How can I achieve this using roxygen? Thanks Mark

I am modifying a package that appears to have been made with roxygen. I'm currently running Debian stable (wheezy) amd64 with the stock R 2.15.1. I have some other, mostly older, flavors as well. roxygen doesn't seem to be in the Debian repositories or (if I wanted to switch to R v3) http://cran.r-project.org/bin/linux/debian/wheezy-cran3/. Any tips? Just install from source and

Many thanks, Duncan. We will check the prerelease versions of R 3.2.1. Best regards, Tobias ----- Original Message ----- > From: "Duncan Murdoch" <murdoch.duncan at gmail.com> > To: "Tobias Verbeke" <tobias.verbeke at openanalytics.eu>, "r-devel at r-project.org" <r-devel at r-project.org> > Sent: Saturday, June 6, 2015 2:37:04 PM >

> -----Urspr?ngliche Nachricht----- > Von: roxygen-devel-bounces at lists.r-forge.r-project.org [mailto:roxygen- > devel-bounces at lists.r-forge.r-project.org] Im Auftrag von Vinh Nguyen > Gesendet: Donnerstag, 4. November 2010 04:04 > An: roxygen-devel at r-forge.wu-wien.ac.at > Betreff: Re: [Roxygen-devel] Roxygen: @example tag does not work for me > > Try @examples

Is this the appropriate place for GSoC conversations? If I understand the proposal correctly, there should be a lexer (written in R) that exposes an API; that API would be used by segregated mini-parsers (Roclets) which do the dirty work of Roxygen -> {html, LaTeX, DocBook, ...} translation. The lexer should ship with a proof-of-concept Roclet. Have I missed anything?

L.S. I noticed the NEWS file as made available at http://cran.r-project.org/src/base/NEWS became inconsistent in describing CHANGES for a new R version: $ wget http://cran.r-project.org/src/base/NEWS $ cat NEWS | grep 'CHANGES IN ' CHANGES IN 3.2.0: CHANGES IN R 3.1.3: CHANGES IN R 3.1.2: CHANGES IN R 3.1.1: CHANGES IN R 3.1.0: CHANGES IN R 3.0.3: CHANGES IN R 3.0.2: CHANGES IN R 3.0.1:

Is there any interest in a method of taking a package with documentation in Rd files and attaching it to package R files in Roxygen format? I can see a few problems with a totally general solution but it might be possible to make a script that provides a kickstart to converting a package to Roxygen. Or is it trickier than it seems? Barry

Folks: I am getting a build failure when I: #' @importFrom utils shortPathName which roxygenizes it to the NAMESPACE. I suspect this is because this particular function is Windows-only, but I'm a bit confused how I should "properly" importFrom a function like this so it doesn't cause a build failure, but I don't get a note in my R CMD CHECK if I DON'T have it:

Dear list, When installing the latest version of Rtools (3.1.0.1942) into a path that contains more than 96 characters on Windows 7 64-bit, e.g. into C:\TheLatestRtoolsInAPathWithMoreThanNinetySixCharactersWillCrashTheRSessionUponCallingTheSysWhichFunctionInRToGetTheGccPath and assuming that the Rtools bin paths have been appropriately added to the PATH environment variable as in

I am trying to use function garsim from package gsarima. I can download gsarima package from http://cran.fyxm.net/web/packages/gsarima/index.html for linux. But how I can add it to R. I have compiled and installed R from its R source code under Ubuntu. regards. -- Amar Kumar Nandan Karnataka ,India , 560100 http://aknandan.co.nr [[alternative HTML version deleted]]