similar to: Connecting to "heterogenous" cluster using makeSOCKcluster of SNOW-package

When trying to create (a very simple) cluster using makeSOCKcluster or makeCluster I get the following error message: > library(snow) > cl <- makeSOCKcluster("localhost") Fatal error: kann Datei '~/R/i686-suse-linux-gnu-library/2.8/snow/RSOCKnode.R' nicht ?ffnen: Datei oder Verzeichnis nicht gefunden (translation: could not open file [...]: File or directory not

Dear R-users, I am trying to make Snow and Rmpi working on an heterogenous cluster of linux computers. The master computer is built on a 64 bit architecture whereas all nodes are built on a 32 bit architecture. LAM/MPI was installed successfully on all machine. LAM boots correctly on the master computer and it recognizes all nodes defined in the lamhosts file. However, when starting R,

Hello, I was using snow to parallel-process some code in R-2.10 (32-bit windows. ). The code is as follows: require(foreach) require(doSNOW) cl <- makeCluster(6, type='SOCK') registerDoSNOW(cl) bl2 <- foreach(i=icount(length(unqmrno))) %dopar% { (some code here) } stopCluster(cl) When I run the same code in Windows R-2.11 (either 32-bit or 64-bit), R hangs at

Hello, I'm trying to run a code that uses the snowfall package. Here is the structure of my code. sfInit(parallel=T, cpus = 5, slaveOutfile="ErrorMessage.txt") sfExportAll() sfLibrary(rgdal) sfLibrary(raster) sfLibrary(sp) sfLibrary(rgeos) sfLibrary(snowfall) system.time( sfClusterApplyLB(1:10, function(k) { sfCat(paste("Iteration ", k),

Hi, I am a newbie to R and trying to implement parallelism in R. I am currently using R-2.3.1, and Cygwin to run R on Windows xp. ssh and all are working fine, When I try to create a socket connection as makeSOCKcluster(c("localhost","localhost")), it just waits for the other prcess on localhost to get created and respond. But this other process is

The command which hangs: I'm hoping there is a simple explanation, but I searched on-line and nothing jumped out. > cl <- makeCluster(type="SOCK",c("localhost"),manual=TRUE) Manually start worker on localhost with C:/PROGRA~1/R/R-214~1.2/bin/Rscript.exe "C:/Program Files/R/R-2.14.2/library/snow/RSOCKnode.R" MASTER=localhost PORT=11944 OUT=/dev/null

Hi, I am attempting to implement a mixed (windows/linux) snow sockets parallelism in R, but am running into difficulties similar to a post made Aug 31, 2006 under the same subject heading. I feel like I may be one or two non-obvious steps away from getting it all working, but I'm stuck. If anyone can shed some light on this (I believe Prof. Tierney stated that he has successfully run a

Dear list, I just realized that one of the examples given in the help page to the function makeCluster of the library(snow) has a small syntax error : ## to get started library(snow) ?makeCluster .. will open a halp page containing the command towards the end of the examples : cl <- makeCluster(c(rep(list(macOptions), 2), rep(list(lnxOptions), 2), rep(list(winOptions),

Hi R-users, My question is more methodological one, rather than technical. I have to samples representing residuals based on two measurements techniques (resid1,resid2; n=69). I need to compare two samples, to reject one technique (the worse one), and to keep the one which gave lower residuals (better one). What to look for? What should I analyse? Means, variance, std. deviations? Based on

Dear Luke and others, I have many R versions on my machine and want to start a particular one when snow builds its cluster. (The same version I start snow from.) It seems that everything is set up correctly in defaultClusterOptions: > mget(ls(defaultClusterOptions), defaultClusterOptions) $homogeneous [1] TRUE $manual [1] FALSE $master nodename "maya.unil.ch" $outfile [1]

Dear r-helpers, I am working with plm package. I am trying to fit a fixed effects (or a 'within') model of the form y_it = a_i + b_i*t + e_it, i.e. a model with an individual-specific intercept and an individual- specific slope. Does plm support this directly? Thanks in advance! Otto Kassi

> Message: 24 > Date: Tue, 31 Jan 2006 18:22:52 +0000 > From: "Lutz Ph. Breitling" <lutz.breitling at gmail.com> > Subject: [R] Mixed-effects models / heterogeneous covariances > To: r-help at stat.math.ethz.ch > Message-ID: > <2e38a1c80601311022i2e1be92doa60b80b50b69eb0c at mail.gmail.com> > Content-Type: text/plain; charset=ISO-8859-1 > > Dear

If XCP supports Heterogenour CPU''s and Xencenter only supports it with advanced editons, how will XCP handle it when being used with Xencenter. I have a bunch of different Intel Cpu''s with different steppings and would like to be able to live migrate from within xencenter. Now I have to use the cli commands with my xenserver network and force the migration, but looking to move to

Hi R-users, I am using "postscript("xx.eps", horizontal=FALSE, onefile=FALSE, height=6, width=10, pointsize=10)" and "barplot(xx.dat)" in R to produce EPS graphics for LATeX document. When checking the graphics with "gv" I see that it was not produced with full details. The main graphic is there, but axes labels and titles are missing. While checking the

Hello R-users, Is there any more sophisticated way how to identify the dataset outliers other then seeing them in boxplot? I wanna exclude them from further analysis and I am interested in their position in my vector data. Rado -- Radoslav Bonk M.S. Dept. of Physical Geography and Geoecology Faculty of Sciences, Comenius University Mlynska Dolina 842 15, Bratislava, SLOVAKIA tel: +421 2 602

Hi llvm, it's for sure an obvious idea to use llvm as IR for heterogenous platforms (e.g. CPU+GPU). In theory someone could write plain C/C++ code, which by clang is translated to llvm-IL and then together with JIT-backends packed in an appropriate executable. Thus all the limitations and hassles of openCL or CUDA could be avoided. I wonder if there already is a related project? Of course in

Hi, Does anybody know suitable documents (manuals) on writing user functions (covering loops, conditions ...) in R? Other than the usually available manuals. Thanks, Rado -- Radoslav Bonk M.S. Dept. of Physical Geography and Geoecology Faculty of Sciences, Comenius University Mlynska Dolina 842 15, Bratislava, SLOVAKIA tel: +421 905 968 127 e-mail: rbonk at host.sk

Dear R community, as stated in Breiman et.al. (1984) and De'Ath & Fabricius (2000) using sums of absolute deviations about the median as an impurity measure gives robust trees. I would like to use this method in rpart. Has somebody already tried this method in rpart? Is there maybe already a script available somewhere? I am aware of the possibility to define usersplits myself with

Hi, I'm new to "R". I have a matrix of 6x12. I need to produce matrix of 12x6, such that rows in new matrix are columns from original matrix, and columns in a new matrix are rows from the original one. I was playing with rbind(), and cbind() with no success. Regards, -Rado -- Radoslav Bonk M.S. Dept. of Physical Geography and Geoecology Faculty of Natural Sciences, Comenius

Hi R-users, How can I found the number of a distinct values in a data frame (occurrence of distinct values)? The dataframe consists of several thousands integer numbers. Thanks, Rado -- Radoslav Bonk M.S. Dept. of Physical Geography and Geoecology Faculty of Sciences, Comenius University Mlynska Dolina 842 15, Bratislava, SLOVAKIA tel: +421 905 968 127 e-mail: rbonk at host.sk