similar to: Use of .First() in Mac OS X gui

Hi everyone, I have two questions: I would like to get confidence intervals on the coefficients derived from the optim() function. I apply optim() to a given function f > res <- optim(c(0.08,0.04,1.),f,NULL,method="L-BFGS-B",lower=c(0.,0.,0.)) And I would like to get the p-value and confidence intervals associated with > res$par My second question deals with error message. I

Hello, I'm having difficulty passing an object name to a lapply function. Can somebody tell me the trick to make this work? #Works T13702 <- TRACKDATA[["13702.xls"]][["data"]] min(unlist(lapply(list(T13702), function(x) mdy.date(x[1, 2], x[1, 1], x[1, 3])))) 16553 #Works d<-2 assign(paste("T",substr(names(TRACKDATA)[d],1,(nchar(names(TRACKDATA)[d]

You can test if the problem is accumulation in memory registers, which is certainly what this sounds like. Just do a loop over a reasonably small number of iterations and store or print the time between each iteration. If memory accumulation it will run optimally for the first few iterations, after which the time will increase noticeably (essentially exponentially, hence ultimately freezes up). If

Dear R-users, I haven't found a way in the searchable archive to overplot a contour (lines) over a surface. I have a (n,m) matrix that represents sea surface temperature that I have plotted using image.plot(), filled.contour() or image(). I would like to overplot this image with some contour lines of mixed layer depth values(same size matrix). How can I do this? Any help is appreciated,

Hi, I have been working with R for the last year and using the UKFSST package to look at satellite tag track data and SST information. Fpr those not familiar, the package uses the positions estimated by the satellite tags themselves and the associated SST data from servers (in this case, from the University of Hawaii and the NOAA Coastwatch website) for the time preiod to estimate a reasonable

Had centos 4.1 set up and running with X. Had to replace the monitor to an Acer LCD monitor (model AL1714). When I try to reconfigure X, "system-config-display" seems ok going through the first stage of detecting the graphics card but then returns a floating "Input not supported" message to the screen and nothing happens afterward. Any hints on solving this issue will be

Hi Everyone, I have updated my R version from 2.7 to 2.8 (patch) and since then I can not open HDF5 files that I saved previously with the command hdf5save from the hdf5 library. As anyone had that problem yet? Any help would be appreciated. Thanks Emmanuel ------------------------------------------- Dr. Emmanuel Devred Bedford Institute of Oceanography, 1 Challenger Drive, Dartmouth, Nova

Hello, Might anyone know how to conduct Wald-type F-tests of the fixed effects estimated by glmmPQL? I see this implemented in SAS (GLIMMIX), and have seen it recommended in user group discussions, but haven't come across any code to accomplish it. I understand the anova function treats a glmmPQL fit as an lme fit, with the test assumptions based on maximum likelihood, which is inappropriate

Hello, I'm working with a package that uses download.file in functions to extract information from remote databases. My current environment is Windows XP Pro SP3, R 2.7. A full extraction can be a great deal of data, so the download is accomplished in generally manageable packets, such that a single download will result in many files, which are written to a directory. It is not uncommon for a

I tried to use calcMin with a function that uses a number of ... arguments (all args from resid on) besides the vector of parameters being fit. Same idea as optim, nlm, nlminb for which this form of ... syntax works. But with calcMin I get an error regarding unused arguments. No partial matches to previous arguments that I can see. Anybody know the reason or fix for this?

Hi, I am trying to run the "schools" example in the rbugs library (running winbugs in linux via wine-20041201) but keep getting the following error. Note I have tested wine and winbugs to confirm that both are operational. Error in runBugs(bugs, script.file, n.chains, workingDir, useWine, wine, : BUGS stopped before getting to coda. The command I'm using is:

Hello, I want to add a single contour line to a levelplot but can't figure out how to do it 'on-the-fly'. When I include the last line in the code below, I get the following error: Error in NextMethod("[") : Argument "subscripts" is missing, with no default Any tips on how to fix this are greatly appreciated! Ian Jonsen

I have Samba 2.2.3a running on Tru64 Unix v4.0f (?) I have Win NT4.0 (sp6a) as our local PC OS. I have created a Samba password file for users. I've tried several permutations, but currently I have security = user encrypt passwords = yes unix password sync = yes username map = /../../../usermap.txt I also have standard password encryption on the NT side, i.e. not plaintext. If I sync

hi all, It's not clear to me how (or if) I can pass multiple values for lty to a key in xyplot? I've tried: lines=list(lty=1:3), to no avail. Do I need to use something other than auto.key? (Deepayan, if you're out there, I have your book and must admit the answer isn't jumping out at me.) thanks in advance! Michael Folkes example code: #____________________________

Hello all, I've been using binconf (package Hmisc) at a range of alpha values and noticed that using the 'Wilson' method when alpha is larger (i.e. narrow CI), results in the upper value being smaller than the lower value. The 'exact' and 'asymptotic' methods give results in the realm I'd expect. But the help file suggests: "Following Agresti and Coull, the

I'm using RODBC to read an excel file (not mine!). But I'm struggling to find a way to preserve the column names that have a numeric value. sqlFetch() drops the value and calls them f1, f2, f3,... (ie field number). this is a different approach from read.csv, which will append "V" prior to the numeric column name. sqlFetch isn't so helpful. Is there a way to get the

Perhaps somebody could clarify for me if the following is a floating point matter or otherwise, and how am I to correct for it? > floor(100*.1) [1] 10 > 100*(1.0-.9) [1] 10 > floor(100*(1-0.9)) [1] 9 Thanks! Michael _______________________________________________________ Michael Folkes Salmon Stock Assessment Canadian Dept. of Fisheries & Oceans Pacific Biological Station

I'm looking for an optimal approach to access Oracle databases via RWeb applications. I'm new to R but familiar with programming functions and web pages for the S+ Statserver. I'm now going through the motions of migrating S+/Statserver applications to R/RWeb as a feasability exercise. I can access databases using ODBC directly in R or S, and using Statserver, but I have not succeeded

Hello all, I'm hoping to convert a decimal value for week of the year back to a date object. Eg: strptime(paste(2010,1:52,sep=" "),format="%Y %W") I expected (hoped?) this would give me the date for Monday of each week. Instead, it's giving me 52 values of today's date. Where am I erring? Thanks Michael _______________________________________________________

Hello r-help, I am trying to collapse or aggregate 'some' of a data frame. A very simplified version of my data frame looks like: > tester trip set num sex lfs1 lfs2 1 313 15 5 M 2 3 2 313 15 3 F 1 2 3 313 17 1 M 0 1 4 313 17 2 F 1 1 5 313 17 1 U 1 0 And I want to omit sex from the picture and just get an addition of num,