Displaying 20 results from an estimated 1000 matches similar to: "ctree (party) plot meaning question"
2011 Feb 16
1
caret::train() and ctree()
Like earth can be trained simultaneously for degree and nprune, is there a way to train ctree simultaneously for mincriterion and maxdepth?
Also, I notice there are separate methods ctree and ctree2, and if both options are attempted to tune with one method, the summary averages the option it doesn't support. The full log is attached, and notice these lines below for
2010 Apr 07
1
extracting ctree() output information
Hi,
I am new to R and am using the ctree() function to do customer
segmentation. I am using the following code to generate the tree:
treedata$Response<-factor(treedata$Conversion)
fit<-ctree(Response ~
.,controls=ctree_control(mincriterion=0.99,maxdepth=4),data=treedata)
plot(fit)
print(fit)
The variable "Response" above equals 1 if the customer responded to an
offering and
2012 Jan 19
1
ctree question
Hello. I have used the "party" package to generate a regression tree as
follows:
>origdata<-read.csv("origdata.csv")
>ctrl<-ctree_control(mincriterion=0.99,maxdepth=10,minbucket=10)
>test.ct<-ctree(Y~X1+X2+X3,data=origdata,control=ctrl)
The above works fine. Orig data was my training data. I now have a test
data file (testdata), and
2011 Feb 17
1
missing values in party::ctree
After ctree builds a tree, how would I determine the direction missing values follow by examining the BinaryTree-class object? For instance in the example below Bare.nuclei has 16 missing values and is used for the first split, but the missing values are not listed in either set of factors. (I have the same question for missing values among numeric [non-factor] values, but I assume the answer
2006 Jul 14
1
party - ctree() - terminal nodes reference for every obs
Dear R.Users,
using ctree() (from "party" library) on a data.frame, I want to append a
column with the references for the groups/segments detected. While these
nodes are easy readable in output, I need a vector for my obs.
Hints?
Cheers
--
Daniele Medri
2010 Jul 27
1
Cforest mincriterion
Hi,
Could anyone help me understand how the mincriterion threshold works in
ctree and cforest of the party package? I've seen examples which state that
to satisfy the p < 0.05 condition before splitting I should use mincriterion
= 0.95 while the documentation suggests I should use mincriterion =
qnorm(0.95) which would obviously feed the function a different value.
Thanks in advance,
2012 Aug 23
0
party package: ctree - survival data - extracting statistics/predictors
Dear R users,
I am trying to apply the analysis processed in a paper, on the data I'm working with.
The data is: 80 patients for which I have survival data (time - days, and event - binary), and microarray expression data for 200 genes (predictor continuous variables).
My data matrix "data.test" has ncol: 202 and nrow: 80.
What I want to do is:
- run recursive partitioning on
2010 Mar 09
2
ctree - party package multivariate response variables
Hi,
I have a problem with ctree of party package.
I have data on distribution of more than one species (about 50 species) and I
would like identify the relation of this multivariate object (species
distribution) with a number of explanatory variables.
rs is the name of my dataframe containing the species (columns from 2 to 51) and
the explanatory variables (columns 52 and 53). Rows are my
2009 Nov 20
1
ctree (party) changing font sizes in plots
When plotting Binary Trees (ctree) from the party package, is there a
way to adjust the font sizes of the leaves?
require(party)
irisct <- ctree(Species ~ ., data = iris)
plot(irisct)
I want to adjust the font sizes for "Node 2", "Node 5", etc. I'd also
like to be able to adjust the font sizes for the x-axis and y-axis
labels of the histograms.
Thanks,
2011 Jun 22
1
caret's Kappa for categorical resampling
Hello,
When evaluating different learning methods for a categorization problem with
the (really useful!) caret package, I'm getting confusing results from the
Kappa computation. The data is about 20,000 rows and a few dozen columns,
and the categories are quite asymmetrical, 4.1% in one category and 95.9% in
the other. When I train a ctree model as:
model <- train(dat.dts,
2011 Feb 07
5
"Where" command in ctree (party)
Hello,
I need to classify (i.e., export a vector with terminal node id's) new cases
using a ctree (party package) model based on different cases (learning
sample).
I tried the where command with the following syntax:
> where(tree, newdata=data2)
expecting to get terminal nodes of data2 cases based on rules of tree model
(data1 as learning sample). However it returned the following error
2012 Jan 06
1
Please help!! How do I set graphical parameters for ploting ctree()
I'm trying to understand how to set graphical parameters for trees created with the party package. For example take the following code:
library(party)
data(airquality)
airq <- subset(airquality, !is.na(Ozone))
airct <- ctree(Ozone ~ ., data = airq,
controls = ctree_control(maxsurrogate = 3))
plot(airct)
My problem is, I've got a ctree that has
2011 Sep 08
1
Need formatting help - ctree - plot.party - node_hist
Hi,
I am trying to get the terminal nodes of a plot of a ctree object to look nice.
Using the iris data I have:
library(party)
mtree <- ctree(Species ~ ., data=iris)
plot(mtree,terminal_panel=node_barplot(mtree))
The terminal nodes don't display the species names because the names
are displayed horizontally. ?I would like to reduce the size of the
labels and make the terminal nodes
2013 Apr 02
1
ctree (party) - select a specific variable in the first split
Hello,
My question is related to ctree() function from the library 'party'.
Is there a way to force ctree() to use a specific variable in the first
split? I am asking because the first split contains two variables with
very similar scores, and choosing the alternative variable would induce
a tree somewhat easier to interpret.
Thanks,
Sal
2010 Nov 15
1
Path to nodes in ctree package party
Hallo list,
I'm wondering if there is a way to extract the path to terminal nodes
in a BinaryTree object, e.g. ctree, like the function path.rpart in
package rpart.
Thanks, Sven
2011 Jul 31
1
R: print and ctree
I have run the ctree function, and my dependent variable is broken into 3
categories: low cost, moderate cost and high cost.
When i plot the results (eg. using plot(test.ct)), the plot shows, at the
very bottom of each node, the probability of falling into each cost
category.
When i print the actual results (eg. using print(test.ct)), i get all of the
backup
2010 Oct 12
6
Rpart query
Hi,
Being a novice this is my first usage of R.
I am trying to use rpart for building a decision tree in R. And I have the
following dataframe
Outlook Temp Humidity Windy Class
Sunny 75 70 Yes Play
Sunny 80 90 Yes Don't Play
Sunny 85 85 No Don't Play
Sunny 72 95 No Don't Play
Sunny 69 70 No Play
Overcast 72 90 Yes Play
Overcast 83 78 No Play
Overcast 64 65 Yes Play
Overcast 81 75
2006 Mar 01
1
Problems to get a ctree plot (library party) in a file via jpeg/png
Hello All,
I am using library "party" and I have found a curious/strange behaviour when
trying to save the output of a ctree in a file via jpeg/png command.
If you use:
################
library(party)
airq <- subset(airquality, !is.na(Ozone))
airct <- ctree(Ozone ~ ., data = airq)
plot(airct, terminal_panel = node_boxplot, drop_terminal = FALSE)
###############
you get a
2009 Oct 05
1
btrfs-progs trivial: Double definition of BTRFS_CSUM_TYPE_CRC32 in ctree.h
Hello,
I noticed a double definition of BTRFS_CSUM_TYPE_CRC32 in ctree.h
and attach a patch that removes it.
Best regards,
Dirk
2009 Sep 26
1
mboost_1.1-3 blackboost_fit (PR#13972)
Full_Name: Ivan the Terrible
Version: 2.9.2
OS: Windows XP SP3
Submission from: (NULL) (89.110.13.151)
When using the method blackboost_fit of the package mboost appear following
error :
Error in party:::get_variables(obj at responses) :
trying to get slot "responses" from an object (class "boost_data") that is not
an S4 object
Simple test case that produce bug: